Papers

Frenkel-Morgenstern, M. et. al. (2015)

ChiTaRS 2.1-an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts.

Nucleic Acids Res., 43 (Database issue): D68-75.

Frenkel-Morgenstern, M. et. al. (2013)

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.

Nucleic Acids Res., 41(1) (Database issue): D142-151.

Frenkel-Morgenstern, M. et. al. (2012)

Chimera taking shape: Potential functions of proteins encoded by chimeric RNAs.

Genome Res., 22(7): 1231-42.

Frenkel-Morgenstern, M. and Valencia, A. (2012)

Novel domain combinations in proteins encoded by chimeric transcripts.

Bioinformatics, 28(12): i67-74.

Rogers, M.F. et. al. (2012)

SpliceGrapher: Detecting patterns of alternative splicing from RNA-seq data in the context of gene models and EST data.

Genome Biol., 13(1): R4.

Tress, M.L. et. al. (2008)

Proteomics studies confirm the presence of alternative protein isoforms on a large scale.

Genome Biol., 9(11): R162.

ENCODE Consortium et. al. (2007)

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Nature, 447(7146): 799-816.

Levin, Y. et. al. (2011)

Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: a systematic evaluation.

Proteomics, 11(16): 3273-87.