Methods

Datasets and Annotation

Mapping the Chimeric Transcripts by the RNA-Seq Paired Reads

Visualization of Chimeras by SpliceGraphs

Identification Chimeric Proteins by the Mass-Spectrometry Experiments

References

  1. Li, X. et. al. (2009) Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes. J Mol Evol. 68(1):56-65.
  2. Kim, P. et. al. (2010) ChimerDB 2.0-a knowledgebase for fusion genes updated. Nucleic Acids Res. 38(Database issue): D81-5.
  3. Guido Lab. GEM Tool and Library.
  4. Rogers, M.F. et. al. (2012) SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data. Genome Biol. 13(1): R4.
  5. Tress, M.L. et. al. (2008) Proteomics studies confirm the presence of alternative protein isoforms on a large scale Genome Biol. 9(11): R162.