Published

• ChiTaRS 5.0: the comprehensive database of chimeric transcripts matched with druggable fusions and 3D chromatin maps. Nucleic Acids Research. (2019) doi: 10.1093/nar/gkz1025
• ChiTaRS-3.1 — the enhanced chimeric transcripts and RNA-seq database matched with protein–protein interactions. Nucleic Acids Research. (2016) doi: 10.1093/nar/gkw1127
• NAR Molecular Biology Database Collection entry number 1589

Linking to the ChiTaRS

You can make the links to ChiTaRS using:

1. organism names (human,mouse,fly,rat,cattle,zebrafish,yeast,pig=1),
2. ChimeraID (e.g. searchtype=chimera_id&searchstr=AB795239),
3. Gene names (e.g. searchtype=gene_name&searchstr=BCR,ABL1),
4. Entrez Gene IDs (e.g. searchtype=gene_name&searchstr=613,25),
5. Gene UniProtKB AC (e.g. searchtype=uniprot&searchstr=D6R904),
6. Chromosomes (e.g. searchtype=chromosome&searchstr=1,X,Y)

and also to use search filters:

1. Hi-C (HiC=1),
2. Rank (rank=1),
3. Junction consistence (junconsis=1),
4. Sense-ANTIsense (sensAsens=1),
5. Read-through Chimeras (readthrough=1),
6. Mass-spec Hits (masspec=1),
7. Breakpoints (brkps_info=1),
8. RNAseq evidence (more_info=1).

The link to ChiTaRS 'FULL COLLECTION & SEARCH' with an organism name (e.g. human) and TPM3, NTRK1 genes looks like:
http://chitars.md.biu.ac.il/bin/search.pl?searchtype=gene_name&searchstr=TPM3,NTRK1&human=1

Links to external sources