Published

• ChiTaRS-3.1 — the enhanced chimeric transcripts and RNA-seq database matched with protein–protein interactions. Nucleic Acids Research. (2016) doi: 10.1093/nar/gkw1127
• ChiTaRS 2.1 - an improved database of the chimeric transcripts and RNA-seq data with novel sense–antisense chimeric RNA transcripts. Nucleic Acids Research. (2014) doi: 10.1093/nar/gku1199
• PubMed link on ChiTaRS 2.1... paper
• ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. Nucleic Acids Research 41 (D1): D142-D151. doi:10.1093/nar/gks1041
• PubMed link on ChiTaRS... paper
• NAR Molecular Biology Database Collection entry number 1589

Linking to the ChiTaRS

You can make the links to ChiTaRS using organism names (human,mouse,fly,rat,cattle,zebrafish,yeast,pig=1), ChimeraID (e.g. searchtype=chimera_id&searchstr=AB795239), Gene names (e.g. searchtype=gene_name&searchstr=BCR,ABL1), Entrez Gene IDs (e.g. searchtype=gene_name&searchstr=613,25), Gene UniProtKB AC (e.g. searchtype=uniprot&searchstr=D6R904), Chromosomes (e.g. searchtype=chromosome&searchstr=1,X,Y) and also to use search filters: Rank (rank=1), Junction Consistence (junconsis=1), Sense-ANTIsense (sensAsens=1), Read-through Chimeras (readthrough=1), Mass-spec Hits (masspec=1), Breakpoints (brkps_info=1), RNAseq evidence (more_info=1).

• The link to 'ChiTaRS FULL COLLECTION & SEARCH' with an organism name (e.g. human) and TPM3, NTRK1 genes looks like:
  http://chitars.md.biu.ac.il/bin/search.pl?searchtype=gene_name&searchstr=TPM3,NTRK1&human=1

Links to external sources

• Mitelman: A database of Chromosome Aberrations and Gene Fusions in Cancer
• Atlas of Genetics and Cytogenetics in Oncology and Haematology
• TICdb, A database of Translocation breakpoints In Cancer
• dbCRID: a database of chromosomal rearrangements
• CytoD 1.0, A database of cytogenetic abnormalities
• ChimerDB 2.0 -- a knowledgebase for fusion genes updated
• ChimerDB -- a knowledgebase for fusion sequences
• DACRO, A disease-Associated Chromosomal Rearrangements Online.
• The National Center for Biotechnology Information
• The European Bioinformatics Institute
• UniProtKB/Swiss-Prot is the manually annotated and reviewed section of the UniProt Knowledgebase
• GeneCards: The Human Gene Database
• iHOP - information Hyperlinked Over Proteins Human Body Map at the Broad Institute
• HYBRIDdb, a database of hybrid genes in the human genome
• COSMIC: Catalogue Of Somatic Mutations In Cancer database
• Decipher, A Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources
• SKY/M-FISH &CGH, A public platform for investigators to share and compare their molecular cytogenetic data