Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'Vps54'

Total of fusion sequences: 8 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens
XR_244939.5
1..250
100.0%
+
2
RBPMS2
Q6ZRY4

NR_138350.1
248..387
99.3%
+
15
1
0
0
intron-intron
Homo Sapiens
XR_244939.5
9..267
100.0%
+
2
RBPMS2
Q6ZRY4

NR_138350.1
265..410
99.4%
+
15
1
0
0
intron-intron
Homo Sapiens 1..60
95.0%
+
2
41..61
100.0%
-
12
1
0
0
intron-intron
Homo Sapiens
XM_005273551.4
1..1605
99.6%
+
8

XR_244939.5
347..3013
98.4%
-
2
1
0
0
intron-intron
Homo Sapiens COX15
Q7KZN9

NM_001320976.1
1..25
100.0%
-
10

XR_244939.5
3..82
100.0%
+
2
1
0
0
intron-intron
Homo Sapiens
XR_001738770.2
5..33
100.0%
+
2

XM_011534861.1
20..131
95.3%
+
13
1
0
0
intron-intron
Homo Sapiens
XM_006715754.3
194..325
96.0%
+
7

XR_001738770.2
226..447
95.7%
+
2
1
0
0
intron-intron
Homo Sapiens
XR_244939.5
1..195
99.5%
-
2
ANKHD1-EIF4EBP3
H7C0V5

NM_020690.5
193..733
98.5%
+
5
1
0
0
intron-intron

T o p