Result for the search of Gene Name/NCBI ID(s): 'Vgll4'

Total of fusion sequences: 4 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	SplGraphs CX211075 ANNOTATION OF CHIMERA FUSION GenBank ID: CX211075 FASTA Head Gene (1) Alignment: Recql5 Tail Gene (2) Alignment: Vgll4 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 170472 11 - 115895015 115896129 5 1 protein-coding 232334 6 - 114862839 114890730 3 1 protein-coding 720 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Recql5 J3QM90 J3QMY1 J3QP94 Q76MT2 Q76MT3 Q8VE77 Q8VID5 XM_006532358.3	1..374 100.0%	- 11	Vgll4 D3YZY3 D3Z130 Q3TQI9 Q3TSJ2 Q80V24 XM_006506010.1	369..720 99.8%	- 6	1 0 0	exon-exon
2 Mus musculus	AA544892 ANNOTATION OF CHIMERA FUSION GenBank ID: AA544892 FASTA Head Gene (1) Alignment: Vgll4 Tail Gene (2) Alignment: Vgll4 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 232334 6 - 114861834 114861984 1 1 protein-coding 232334 6 - 114864053 114864491 2 1 protein-coding 606 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Vgll4 D3YZY3 D3Z130 Q3TQI9 Q3TSJ2 Q80V24 XM_006506010.1	1..151 100.0%	- 6	Vgll4 D3YZY3 D3Z130 Q3TQI9 Q3TSJ2 Q80V24 XM_006506013.3	146..576 97.7%	- 6	0 21978 24859	exon-exon	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - AA544892 Vgll4 6 114861979 114861984 114860000 1979 Vgll4 6 114864053 114864058 114860000 4053 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249 AA544892 Vgll4 6 114861979 114861984 114860000 1979 Vgll4 6 114864053 114864058 114870000 5942 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249 AA544892 Vgll4 6 114861979 114861984 114870000 8016 Vgll4 6 114864053 114864058 114870000 5942 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
3 Mus musculus	AK080097 ANNOTATION OF CHIMERA FUSION GenBank ID: AK080097 FASTA Head Gene (1) Alignment: Vgll4 Tail Gene (2) Alignment: Vgll4 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 232334 6 - 114883200 114883962 0 0 protein-coding 232334 6 - 114888912 114889865 0 0 protein-coding 1712 mm10 Updated: 2019-05-29 Owner: ChiTaRS	Vgll4 D3YZY3 D3Z130 Q3TQI9 Q3TSJ2 Q80V24 XM_006506010.1	1..763 100.0%	- 6	Vgll4 D3YZY3 D3Z130 Q3TQI9 Q3TSJ2 Q80V24 XM_006506010.1	755..1712 98.6%	- 6	0 21978 24859	intron-intron
4 Mus musculus	CF553882 ANNOTATION OF CHIMERA FUSION GenBank ID: CF553882 FASTA Head Gene (1) Alignment: Uts2b Tail Gene (2) Alignment: Vgll4 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 224065 16 - 27366649 27366671 0 0 232334 6 - 114862248 114875015 4 1 protein-coding 877 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Uts2b Q3V249 Q3V285 Q765I1 NM_198166.3	24..46 100.0%	- 16	Vgll4 D3YZY3 D3Z130 Q3TQI9 Q3TSJ2 Q80V24 XM_006506013.3	45..807 98.9%	- 6	1 0 0	intron-exon

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