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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'VPS28'

Total of fusion sequences: 6 (from 2,403,910 parsed EST/mRNAs. Last update 2020-02-09 10:24:42)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
ChimerDB
XM_005272324.4
1..372
100.0%
-
8
RNA45SN3
NR_146151.1
367..581
100.0%
+
21
0
23
1331
exon-exon
2
Homo Sapiens
ChimerDB
XM_005272324.4
19..505
99.8%
+
8
RNA45SN3
NR_146151.1
499..759
100.0%
-
21
0
23
1331
exon-exon
3
Homo Sapiens

XM_005272324.4
14..100
98.5%
+
8

NM_013432.4
101..461
98.5%
+
8
1
0
0
intron-intron
4
Homo Sapiens

XR_002957130.1
1..212
98.1%
-
1

XM_005272324.4
204..359
99.4%
+
8
1
0
0
intron-intron
5
Homo Sapiens

XM_011522521.3
1..1263
99.2%
+
16

XM_005272324.4
1259..1729
99.8%
-
8
1
0
0
exon-exon
6
Homo Sapiens

NM_001321020.1
4..122
100.0%
-
19

XM_005272324.4
116..483
100.0%
-
8
1
0
0
exon-exon

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