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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'VPS28'

Total of fusion sequences: 6 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens ChimerDB
XM_005272324.4
1..372
100.0%
-
8
RNA45SN3
NR_146151.1
367..581
100.0%
+
21
0
23
1331
exon-exon
Homo Sapiens ChimerDB
XM_005272324.4
19..505
99.8%
+
8
RNA45SN3
NR_146151.1
499..759
100.0%
-
21
0
23
1331
exon-exon
Homo Sapiens
XM_005272324.4
14..100
98.5%
+
8

NM_013432.4
101..461
98.5%
+
8
1
0
0
intron-intron
Homo Sapiens
XR_002957130.1
1..212
98.1%
-
1

XM_005272324.4
204..359
99.4%
+
8
1
0
0
intron-intron
Homo Sapiens
XM_011522521.3
1..1263
99.2%
+
16

XM_005272324.4
1259..1729
99.8%
-
8
1
0
0
exon-exon
Homo Sapiens
NM_001321020.1
4..122
100.0%
-
19

XM_005272324.4
116..483
100.0%
-
8
1
0
0
exon-exon

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