Result for the search of Gene Name/NCBI ID(s): 'VPS13B'

Total of fusion sequences: 30 (from 3,568,812 parsed EST/mRNAs. Last update: 2020-07-14 10:36:55)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB DB046530 ANNOTATION OF CHIMERA FUSION GenBank ID: DB046530 FASTA Head Gene (1) Alignment: VPS13B | OMIM: 607817 Tail Gene (2) Alignment: TUBGCP5 | OMIM: 608147 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 157680 8 + 99292971 99293362 20 0 protein-coding 114791 15 - 23024028 23030925 10 1 protein-coding 577 hg38 Updated: 2019-02-21 Owner: ChiTaRS	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_024447074.1	1..94 96.4%	+ 8	TUBGCP5 A0A087WVL9 A0A087WVZ8 A0A087X006 A0A087X1Z1 A0A0G2JPW5 A0A0G2JQI0 A0A0G2JQK2 A0A0G2JQK7 A0A0G2JQW0 A0A0G2JQX1 A0A0G2JR45 A0A0G2JRG1 A0A0G2JS51 A0A0G2JSA7 Q96RT8 NR_148875.1	71..577 99.9%	- 15	1 0 0	intron-exon
2 Homo Sapiens	BI493301 ANNOTATION OF CHIMERA FUSION GenBank ID: BI493301 FASTA Head Gene (1) Alignment: PODXL | OMIM: 602632 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5420 7 - 131500271 131500563 1 1 protein-coding 157680 8 + 99478816 99478847 39 0 protein-coding 327 hg38 Updated: 2019-02-17 Owner: ChiTaRS	PODXL B7ZKQ8 G3V0E6 O00592 NM_001018111.2	8..300 100.0%	- 7	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_017013112.1	283..313 100.0%	+ 8	1 0 0	exon-intron
3 Homo Sapiens	BI493300 ANNOTATION OF CHIMERA FUSION GenBank ID: BI493300 FASTA Head Gene (1) Alignment: VPS13B | OMIM: 607817 Tail Gene (2) Alignment: PODXL | OMIM: 602632 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 157680 8 - 99478816 99478847 25 0 protein-coding 5420 7 + 131500271 131500563 9 1 protein-coding 314 hg38 Updated: 2019-02-17 Owner: ChiTaRS	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_024447074.1	2..32 100.0%	- 8	PODXL B7ZKQ8 G3V0E6 O00592 NM_001018111.2	15..307 99.0%	+ 7	1 0 0	intron-exon
4 Homo Sapiens	BU608568 ANNOTATION OF CHIMERA FUSION GenBank ID: BU608568 FASTA Head Gene (1) Alignment: VPS13B | OMIM: 607817 Tail Gene (2) Alignment: GDPD1 | OMIM: 616317 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 157680 8 - 99877504 99877580 63 1 protein-coding 284161 17 + 59275247 59275941 1 1 protein-coding 778 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Chorein_N (PF12624, IPR026854) 116 39 157 1.1e-30 92.400 N-terminal region of Chorein or VPS13 VPS13 (PF16908, IPR031646) 233 176 317 3.3e-08 19.700 Vacuolar sorting-associated protein 13, N-terminal SHR-BD (PF06650, IPR009543) 271 2665 2764 5.7e-11 28.400 SHR-binding domain of vacuolar-sorting associated protein 13 VPS13_C (PF16909, IPR031645) 178 3605 3771 3.3e-31 94.500 Vacuolar-sorting-associated 13 protein C-terminal ATG_C (PF09333, IPR015412) 96 3774 3878 2.5e-09 23.700 Autophagy-related protein C terminal domain Updated: 2019-02-21 Owner: ChiTaRS	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_024447074.1	18..94 100.0%	- 8	GDPD1 J3KTA9 J3QQN7 J3QRR6 Q8N9F7 NM_182569.3	84..778 100.0%	+ 17	1 0 0	exon-exon
5 Homo Sapiens	BF339447 ANNOTATION OF CHIMERA FUSION GenBank ID: BF339447 FASTA Head Gene (1) Alignment: HBA2 | OMIM: 141850 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3040 16 + 172911 173706 3 1 protein-coding 157680 8 - 99478462 99478490 39 0 protein-coding 564 hg38 Updated: 2019-01-10 Owner: ChiTaRS	HBA2 A0A0K2BMD8 A0A1S5UZ39 A0A2R8Y7C0 A0A385HVY8 A0A385HVZ2 A0A385HW00 A0A385HW02 A0A385HW21 A0A385HW63 A0A3S8UZ26 D1MGQ2 E9LUX2 G3V1N2 P69905 Q7Z6G4 Q86YQ1 Q86YQ5 Q96T46 U3PXP0 U6A3P2 U6A493 NM_000517.4	1..536 100.0%	+ 16	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_017013112.1	536..562 100.0%	- 8	1 0 0	exon-intron
6 Homo Sapiens	CB050843 ANNOTATION OF CHIMERA FUSION GenBank ID: CB050843 FASTA Head Gene (1) Alignment: VPS13B | OMIM: 607817 Tail Gene (2) Alignment: SIRT2 | OMIM: 604480 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 157680 8 + 99478448 99478829 0 0 protein-coding 22933 19 + 38878560 38878910 1 1 tumor suppressor, protein-coding 383 hg38 Updated: 2019-04-13 Owner: ChiTaRS	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_024447074.1	8..40 100.0%	+ 8	SIRT2 A0A024R0G8 A0A087WYM3 A0A0A0MRF5 B5MCS1 C9J3U7 C9JR33 C9JZQ0 E7EWX6 F8WBT6 F8WCF4 F8WDM4 F8WF57 Q8IXJ6 XM_006723111.1	24..374 99.2%	+ 19	1 0 0	intron-exon
7 Homo Sapiens	AX381737 ANNOTATION OF CHIMERA FUSION GenBank ID: AX381737 FASTA Head Gene (1) Alignment: BICRA | OMIM: 605690 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29998 19 + 47702926 47703277 15 1 tumor suppressor, protein-coding 157680 8 + 99647569 99647588 28 0 protein-coding 385 hg38 Updated: 2019-01-31 Owner: ChiTaRS	BICRA A0A087WWH3 M0QYC3 Q9NZM4 NM_015711.3	13..362 100.0%	+ 19	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_024447074.1	357..376 100.0%	+ 8	1 0 0	exon-intron
8 Homo Sapiens	BF342280 ANNOTATION OF CHIMERA FUSION GenBank ID: BF342280 FASTA Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6727 15 - 40036046 40039144 6 2 protein-coding 157680 8 - 99478443 99515395 39 0 protein-coding 754 hg38 Updated: 2019-01-02 Owner: ChiTaRS	SRP14 H0YLA2 H0YLW0 P37108 NM_001309434.1	1..722 98.2%	- 15	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_017013112.1	348..750 98.2%	- 8	1 0 0	exon-intron
9 Homo Sapiens	BF216037 ANNOTATION OF CHIMERA FUSION GenBank ID: BF216037 FASTA Head Gene (1) Alignment: NOP10 | OMIM: 606471 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55505 15 - 34341719 34343139 2 1 protein-coding 157680 8 - 99478450 99478478 39 0 protein-coding 867 hg38 Updated: 2019-01-12 Owner: ChiTaRS	NOP10 H0YM60 Q9NPE3 NM_018648.3	2..507 99.9%	- 15	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_017013112.1	504..531 100.0%	- 8	1 0 0	exon-intron
10 Homo Sapiens	CV310646 ANNOTATION OF CHIMERA FUSION GenBank ID: CV310646 FASTA Head Gene (1) Alignment: NBAS | OMIM: 608025 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51594 2 + 15324153 15324408 0 0 protein-coding 157680 8 + 99429435 99429541 1 1 protein-coding 359 hg38 Updated: 2019-04-10 Owner: ChiTaRS	NBAS A2RRP1 C9JCM7 G1UI26 H0Y5G7 H7BZR3 H7BZU5 H7C007 H7C1U4 H7C1Y9 L8E9V8 XM_017004317.1	1..256 98.9%	+ 2	VPS13B H0YB72 L8EAQ4 Q7Z7G8 Q8N509 Q8WW67 XM_017013111.1	253..359 100.0%	+ 8	1 0 0	intron-exon

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