Result for the search of Gene Name/NCBI ID(s): 'VAMP1'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB BI020058 ANNOTATION OF CHIMERA FUSION GenBank ID: BI020058 FASTA Head Gene (1) Alignment: VAMP1 | OMIM: 185880 Tail Gene (2) Alignment: NUDT3 | OMIM: 609228 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6843 12 - 6464480 6464577 1 1 protein-coding 11165 6 - 34284565 34284681 5 1 protein-coding 212 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Synaptobrevin (PF00957, IPR001388) 89 182 268 8.1e-35 104.900 Synaptobrevin Updated: 2019-02-02 Owner: ChiTaRS	VAMP1 F5GZV7 P23763 NM_199245.2	1..98 98.0%	- 12	NUDT3 O95989 ENST00000607016	96..212 99.2%	- 6	1 0 0	exon-exon
2 Homo Sapiens	ChimerDB BG685833 ANNOTATION OF CHIMERA FUSION GenBank ID: BG685833 FASTA Head Gene (1) Alignment: VAMP1 | OMIM: 185880 Tail Gene (2) Alignment: CDC42SE2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6843 12 - 6462534 6463127 1 1 protein-coding 56990 5 - 131246509 131246678 6 0 protein-coding 753 hg38 Updated: 2019-02-17 Owner: ChiTaRS	VAMP1 F5GZV7 P23763 NM_014231.4	1..594 99.9%	- 12	CDC42SE2 D6REL0 H0Y9W5 Q9NRR3 ENST00000503291	563..725 95.4%	- 5	1 0 0	exon-intron
3 Homo Sapiens	ChimerDB BF528396 ANNOTATION OF CHIMERA FUSION GenBank ID: BF528396 FASTA Head Gene (1) Alignment: VAMP1 | OMIM: 185880 Tail Gene (2) Alignment: NSUN5P2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6843 12 - 6464890 6470645 5 1 protein-coding 260294 7 - 72949400 72950196 8 1 pseudo 1087 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to ig (PF00047, IPR013151, SM00409) 87 338 358 0.0033 3.900 Immunoglobulin domain C1-set (PF07654, IPR003597, SM00407) 89 366 455 5.5e-13 35.600 Immunoglobulin C1-set domain Synaptobrevin (PF00957, IPR001388) 89 793 881 2.8e-35 106.300 Synaptobrevin Updated: 2019-02-17 Owner: ChiTaRS	VAMP1 F5GZV7 P23763 NM_014231.4	1..454 99.6%	- 12	NSUN5P2 Q3KNT8 Q63ZY6 NR_033323.3	455..792 98.1%	- 7	1 0 0	exon-exon
4 Homo Sapiens	AI695852 ANNOTATION OF CHIMERA FUSION GenBank ID: AI695852 FASTA Head Gene (1) Alignment: VAMP1 | OMIM: 185880 Tail Gene (2) Alignment: TAPBPL | OMIM: 607081 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6843 12 - 6462364 6462370 1 1 protein-coding 55080 12 - 6458912 6462295 4 1 protein-coding 389 hg38 Updated: 2019-04-13 Owner: ChiTaRS	VAMP1 F5GZV7 P23763 NM_001297438.1	1..7 100.0%	- 12	TAPBPL G3V1T3 Q9BX59 NR_147127.1	8..389 100.0%	- 12	2 416 350	exon-exon
5 Homo Sapiens	BQ327713 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ327713 FASTA Head Gene (1) Alignment: TAPBPL | OMIM: 607081 Tail Gene (2) Alignment: VAMP1 | OMIM: 185880 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55080 12 + 6462522 6462711 9 0 protein-coding 6843 12 - 6462714 6462789 5 1 protein-coding 283 hg38 Updated: 2019-02-17 Owner: ChiTaRS	TAPBPL G3V1T3 Q9BX59 XR_001748781.2	20..211 95.3%	+ 12	VAMP1 F5GZV7 P23763 NM_014231.4	208..283 100.0%	- 12	2 416 350	intron-exon

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