Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'UBAP2'

Total of fusion sequences: 10 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA791004 FASTA
Head Gene (1) Alignment: PCYOX1 | OMIM: 610995 Tail Gene (2) Alignment: UBAP2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
514492+702581497026138631protein-coding558339-3394181533941864161protein-coding 559 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Amino_oxidase (PF01593, IPR002937) 451 53 149 1.2e-10 27.200 Flavin containing amine oxidoreductase
Prenylcys_lyase (PF07156, IPR010795) 372 133 221 8e-18 50.700 Prenylcysteine lyase
EBP50_C (PF09007, IPR015098) 130 268 393 0.016 2.400 EBP50, C-terminal
Alpha_GJ (PF03229, IPR004913) 126 300 395 0.00069 6.400 Alphavirus glycoprotein J
DUF3446 (PF11928, IPR021849) 88 456 524 0.022 1.400 Domain of unknown function (DUF3446)
Updated: 2019-02-21
Owner: ChiTaRS
NM_016297.3		1..511
99.7%		+
2
NM_018449.3		510..559
100.0%		-
9		1
0
0		exon-exon
2
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA038406 FASTA
Head Gene (1) Alignment: UBAP2 Tail Gene (2) Alignment: MLH1 | OMIM: 120436 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
558339-3399878734048884291protein-coding42923+370256343702591381oncogene,
tumor suppressor,
protein-coding		 557 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Mlh1_C (PF16413, IPR032189) 272 248 502 1.6e-99 318.800 DNA mismatch repair protein Mlh1 C-terminus
Updated: 2019-01-05
Owner: ChiTaRS
NM_018449.3		3..280
99.7%		-
9
NM_001258274.2		278..557
100.0%		+
3		1
0
0		exon-exon
3
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF884501 FASTA
Head Gene (1) Alignment: TMEM37 Tail Gene (2) Alignment: UBAP2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1407382+11943780511943807021protein-coding558339-3393349033933585181protein-coding 366 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
TMEM37 (PF15108, IPR029372) 183 18 198 6.8e-98 312.100 Voltage-dependent calcium channel gamma-like subunit protein family
Alpha_GJ (PF03229, IPR004913) 126 441 535 0.00084 6.100 Alphavirus glycoprotein J
TFIIA (PF03153, IPR004855) 415 602 853 2.8e-05 10.300 Transcription factor IIA, alpha/beta subunit
Updated: 2019-02-20
Owner: ChiTaRS
XM_005263598.4		12..277
99.3%		+
2
NM_018449.3		268..363
99.0%		-
9		1
0
0		exon-exon
4
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW175600 FASTA
Head Gene (1) Alignment: ZNF160 | OMIM: 600398 Tail Gene (2) Alignment: UBAP2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
9033819-530903635309051160protein-coding558339-339890073398905751protein-coding 205 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_001322139.1		1..149
100.0%		-
19
NM_018449.3		146..196
100.0%		-
9		1
0
0		intron-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA792563 FASTA
Head Gene (1) Alignment: UBAP2 Tail Gene (2) Alignment: UBAP1 | OMIM: 609787 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
558339-3404882334048894291protein-coding512719+342209073424151361protein-coding 565 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
UPF0054 (PF02130, IPR002036) 127 410 485 1.1e-05 11.500 Uncharacterized protein family UPF0054
UBA (PF00627, IPR000449, SM00165) 37 416 452 5.6e-06 12.600 UBA/TS-N domain
MerR-DNA-bind (PF09278, IPR015358) 65 484 526 1.2e-05 12.100 MerR, DNA binding
Updated: 2019-02-21
Owner: ChiTaRS
NM_018449.3		1..72
100.0%		-
9
NM_001171203.2		70..565
100.0%		+
9		1
0
0		exon-exonBREAKPOINTs
21031579
25500544
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: Y10183 FASTA
UniProtKB: Q13740 CD166 antigen (Activated leukocyte cell adhesion molecule) (CD antigen CD166)
Fusion Gene(s): ALCAM MEMD
Head Gene (1) Alignment: ALCAM | OMIM: 601662 Tail Gene (2) Alignment: UBAP2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2143+105367412105576900161protein-coding558339+340453363404538510protein-coding 4235 hg38
Updated: 2019-02-17
Owner: ChiTaRS
NM_001627.3		1..4194
99.9%		+
3
NM_018449.3		4187..4228
97.7%		+
9		1
0
0		exon-intron
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BI009388 FASTA
Head Gene (1) Alignment: UBAP2 Tail Gene (2) Alignment: FBXL2 | OMIM: 605652 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
558339+339238023392395261protein-coding258273+3335591733356261140protein-coding 501 hg38
Updated: 2019-02-21
Owner: ChiTaRS
NM_018449.3		16..163
99.4%		+
9
NR_146125.1		155..501
97.2%		+
3		1
0
0		exon-intron
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: M87904 FASTA
Head Gene (1) Alignment: C9orf24 Tail Gene (2) Alignment: UBAP2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
846889-343942593439430271protein-coding558339-339892153403383840protein-coding 135 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_024447705.1		1..44
96.3%		-
9
NM_018449.3		45..135
96.3%		-
9		1
0
0		exon-intron
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA532670 FASTA
Head Gene (1) Alignment: UBAP2 Tail Gene (2) Alignment: KRT88P Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
558339-339216933392197211protein-coding8534812-522657735226625100pseudo 313 hg38
Updated: 2019-04-13
Owner: ChiTaRS
NM_018449.3		8..289
97.9%		-
9		 KRT88P 124..313
97.5%		-
12		1
0
0		exon-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE174324 FASTA
Head Gene (1) Alignment: UBAP2 Tail Gene (2) Alignment: LOC100128288 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
558339+3397146333971537210protein-coding10012828817-8359941836004911ncRNA 197 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_018449.3		7..79
100.0%		+
9		 LOC100128288
NR_024447.1		74..182
99.1%		-
17		1
0
0		intron-exon

T O P