Result for the search of Gene Name/NCBI ID(s): 'U2AF2'

Total of fusion sequences: 13 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs DB472673 ANNOTATION OF CHIMERA FUSION GenBank ID: DB472673 FASTA Head Gene (1) Alignment: U2AF2 | OMIM: 191318 Tail Gene (2) Alignment: KCNK1 | OMIM: 601745 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11338 19 + 55655065 55660550 5 1 protein-coding 3775 1 + 233666695 233666892 2 1 protein-coding 498 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Presenilin (PF01080, IPR001108) 399 6 180 1.3e-06 13.400 Presenilin Ion_trans_2 (PF07885, IPR013099) 79 133 219 9.3e-20 56.800 Ion channel G0-G1_switch_2 (PF15103, IPR016821) 105 182 277 0.0019 5.000 G0/G1 switch protein 2 Updated: 2019-02-21 Owner: ChiTaRS	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	1..305 99.4%	+ 19	KCNK1 A0A024R3T2 O00180 Q5T5E6 XM_011544184.2	301..498 100.0%	+ 1	1 0 0	exon-exon
2 Homo Sapiens	SplGraphs AI650588 ANNOTATION OF CHIMERA FUSION GenBank ID: AI650588 FASTA Head Gene (1) Alignment: U2AF2 | OMIM: 191318 Tail Gene (2) Alignment: ZFP36L2 | OMIM: 612053 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11338 19 + 55655122 55659284 3 1 protein-coding 678 2 - 43224119 43224484 2 1 oncogene, tumor suppressor, protein-coding 469 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to DUF1509 (PF07420, IPR010883) 384 5 60 0.00049 5.200 Protein of unknown function (DUF1509) Updated: 2019-02-20 Owner: ChiTaRS	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	1..107 100.0%	+ 19	ZFP36L2 P47974 NM_006887.4	105..469 99.2%	- 2	1 0 0	exon-exon
3 Homo Sapiens	CA314707 ANNOTATION OF CHIMERA FUSION GenBank ID: CA314707 FASTA Head Gene (1) Alignment: U2AF2 | OMIM: 191318 Tail Gene (2) Alignment: U2AF2 | OMIM: 191318 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11338 19 - 55661769 55662005 7 0 protein-coding 11338 19 + 55661985 55674664 7 0 protein-coding 485 hg38 Updated: 2019-02-21 Owner: ChiTaRS	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	51..223 99.5%	- 19	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	220..485 98.5%	+ 19	0 10955 12488	intron-intron
4 Homo Sapiens	CN409107 ANNOTATION OF CHIMERA FUSION GenBank ID: CN409107 FASTA Head Gene (1) Alignment: U2AF2 | OMIM: 191318 Tail Gene (2) Alignment: U2AF2 | OMIM: 191318 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11338 19 + 55674257 55674523 14 1 protein-coding 11338 19 + 55662587 55663709 7 1 protein-coding 383 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RRM_1 (PF00076, IPR000504, SM00361) 70 214 251 0.012 1.700 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Transformer (PF06495, IPR010519) 182 314 448 3.1e-07 16.800 Fruit fly transformer protein Imm74 (PF15603, IPR028148) 80 700 731 0.00094 5.700 Immunity protein 74 Updated: 2019-02-21 Owner: ChiTaRS	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	51..258 98.6%	+ 19	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	248..383 100.0%	+ 19	0 10955 12488	exon-exon
5 Homo Sapiens	BF372619 ANNOTATION OF CHIMERA FUSION GenBank ID: BF372619 FASTA Head Gene (1) Alignment: U2AF2 | OMIM: 191318 Tail Gene (2) Alignment: F11R | OMIM: 605721 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11338 19 - 55668927 55668990 11 0 protein-coding 50848 1 + 161013559 161013658 1 0 protein-coding 175 hg38 Updated: 2019-02-20 Owner: ChiTaRS	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	17..80 96.9%	- 19	F11R A0A087WY82 D3DVF0 Q6FIB4 Q9Y624 NM_016946.5	68..167 99.0%	+ 1	1 0 0	intron-intron
6 Homo Sapiens	BF854832 ANNOTATION OF CHIMERA FUSION GenBank ID: BF854832 FASTA Head Gene (1) Alignment: NACC2 | OMIM: 615786 Tail Gene (2) Alignment: U2AF2 | OMIM: 191318 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 138151 9 + 136008307 136008589 1 1 protein-coding 11338 19 + 55661140 55661166 1 1 protein-coding 333 hg38 Updated: 2019-04-10 Owner: ChiTaRS	NACC2 A0A024R8I0 Q96BF6 NM_144653.4	23..305 99.0%	+ 9	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	295..321 100.0%	+ 19	1 0 0	exon-exon
7 Homo Sapiens	CB050857 ANNOTATION OF CHIMERA FUSION GenBank ID: CB050857 FASTA Head Gene (1) Alignment: MYH14 | OMIM: 608568 Tail Gene (2) Alignment: U2AF2 | OMIM: 191318 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 79784 19 - 50278812 50278953 0 0 protein-coding 11338 19 - 55674416 55674716 1 1 protein-coding 338 hg38 Updated: 2019-04-13 Owner: ChiTaRS	MYH14 A0A0C4DFM8 A0A2R8Y454 A0A2R8Y4C3 A1L2Z2 M0QY43 Q7Z406 NM_001145809.1	1..30 96.5%	- 19	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	29..329 100.0%	- 19	1 0 0	intron-exon
8 Homo Sapiens	CD368741 ANNOTATION OF CHIMERA FUSION GenBank ID: CD368741 FASTA Head Gene (1) Alignment: U2AF2 | OMIM: 191318 Tail Gene (2) Alignment: ECSCR | OMIM: 615736 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11338 19 - 55674638 55674716 14 1 protein-coding 641700 5 + 139449092 139457808 10 1 protein-coding 586 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RRM_1 (PF00076, IPR000504, SM00361) 70 214 251 0.014 1.600 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CDC45 (PF02724, IPR003874) 627 304 427 0.00038 4.900 CDC45-like protein Updated: 2019-02-21 Owner: ChiTaRS	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	18..96 100.0%	- 19	ECSCR Q19T08 NR_121659.1	96..585 100.0%	+ 5	1 0 0	exon-exon
9 Homo Sapiens	BF508321 ANNOTATION OF CHIMERA FUSION GenBank ID: BF508321 FASTA Head Gene (1) Alignment: MALAT1 | OMIM: 607924 Tail Gene (2) Alignment: U2AF2 | OMIM: 191318 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 378938 11 + 65501225 65501753 2 1 oncogene, ncRNA 11338 19 + 55673947 55674087 1 1 protein-coding 328 hg38 Updated: 2019-02-20 Owner: ChiTaRS	MALAT1 NR_144568.1	1..190 100.0%	+ 11	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	188..328 99.3%	+ 19	1 0 0	exon-exon
10 Homo Sapiens	CF147158 ANNOTATION OF CHIMERA FUSION GenBank ID: CF147158 FASTA Head Gene (1) Alignment: DMD | OMIM: 300377 Tail Gene (2) Alignment: U2AF2 | OMIM: 191318 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1756 X - 32088497 32088518 0 0 oncogene, tumor suppressor, protein-coding 11338 19 + 55674597 55674716 1 1 protein-coding 213 hg38 Updated: 2019-04-13 Owner: ChiTaRS	DMD A0A075B6G3 A0A087WTU7 A0A087WV90 A0A0B4J1W6 A0A0C4DH61 A0A0S2Z3B2 A0A0S2Z3B5 A0A0S2Z3J7 A0A0S2Z3M6 A1L0U9 A7E212 B4DSV7 E7EQR9 E7EQS5 E7ESB2 E9PDN5 F1CFE6 F2WSI7 F5GZY3 F8VX32 H0Y304 H0Y3E8 H0Y864 L8E939 L8ECA9 P11532 Q14172 Q14174 Q15945 Q16484 Q4G0X0 Q548X2 Q6PK12 Q7KZ40 Q8TCV2 Q8WTQ2 Q8WTT4 Q8WYB7 Q8WYB8 Q8WYB9 Q8WYC0 Q8WYC1 Q8WYC2 Q8WYC3 Q8WYC4 Q8WYC5 Q8WYC6 Q8WYC7 Q8WYC8 Q8WYC9 Q8WYD0 Q8WYD1 Q8WYD2 Q8WYD3 Q8WYD4 Q8WYD5 Q8WYD6 Q8WYD7 Q8WYD8 Q8WYD9 Q8WYE0 Q8WYE1 Q8WYE2 Q8WYE3 Q8WYE4 Q8WYE5 Q8WYE6 Q8WYE7 Q8WYE8 Q8WYE9 Q8WYF0 Q8WYF1 Q8WYF2 Q8WYF3 Q8WYF4 Q8WYF5 Q8WYF6 Q9UEH4 Q9UME2 Q9UMG1 Q9UMK6 Q9UMK7 Q9UMK8 Q9UPB4 Q9UPB5 NM_004009.3	30..51 100.0%	- X	U2AF2 B5BU25 K7ELP8 K7ENG2 M0QYQ9 P26368 XM_006722994.2	45..164 100.0%	+ 19	1 0 0	intron-exon

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