Result for the search of Gene Name/NCBI ID(s): 'Tmem94'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	SplGraphs BU152463 ANNOTATION OF CHIMERA FUSION GenBank ID: BU152463 FASTA Head Gene (1) Alignment: Tmem9 Tail Gene (2) Alignment: Tmem94 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 66241 1 + 136034199 136034272 1 1 protein-coding 71947 11 + 115795657 115797459 6 1 protein-coding 1011 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Tmem9 Q9CR23 NM_001160146.1	20..93 98.7%	+ 1	Tmem94 B1AT96 B1AT97 B1AT98 B1ATA0 Q1LZK8 Q3U2K2 Q7TSH8 Q9CV08 XM_006534271.1	85..730 99.1%	+ 11	1 0 0	exon-exon
2 Mus musculus	AW107792 ANNOTATION OF CHIMERA FUSION GenBank ID: AW107792 FASTA Head Gene (1) Alignment: Tmem94 Tail Gene (2) Alignment: Tmem94 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71947 11 + 115795689 115796468 3 1 protein-coding 71947 11 + 115791078 115791170 1 1 protein-coding 563 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Tmem94 B1AT96 B1AT97 B1AT98 B1ATA0 Q1LZK8 Q3U2K2 Q7TSH8 Q9CV08 XM_006534271.1	195..477 100.0%	+ 11	Tmem94 B1AT96 B1AT97 B1AT98 B1ATA0 Q1LZK8 Q3U2K2 Q7TSH8 Q9CV08 XM_006534271.1	471..562 100.0%	+ 11	1 0 0	exon-exon	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - AW107792 Tmem94 11 115796462 115796468 115790000 6462 Tmem94 11 115791078 115791084 115790000 1078 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
3 Mus musculus	BC115845 ANNOTATION OF CHIMERA FUSION GenBank ID: BC115845 FASTA UniProtKB: Q1LZK8 2310067B10Rik protein (Fragment) Fusion Gene(s): Tmem94 2310067B10Rik Sec1 Head Gene (1) Alignment: Sec1 Tail Gene (2) Alignment: Tmem94 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 56546 7 - 45679533 45679557 0 0 71947 11 + 115793774 115795444 5 0 protein-coding 925 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Sec1 P97353 Q3ZB27 Q496T8 Q8CDC9 XM_017322380.1	1..25 100.0%	- 7	Tmem94 B1AT96 B1AT97 B1AT98 B1ATA0 Q1LZK8 Q3U2K2 Q7TSH8 Q9CV08 XM_006534271.1	13..911 99.9%	+ 11	2 1 0	intron-intron
4 Mus musculus	BC057094 ANNOTATION OF CHIMERA FUSION GenBank ID: BC057094 FASTA UniProtKB: Q8BFW4 Tripartite motif-containing protein 65 Fusion Gene(s): Trim65 Head Gene (1) Alignment: Trim65 Tail Gene (2) Alignment: Tmem94 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 338364 11 - 116121847 116131017 6 1 71947 11 - 115787708 115787756 0 0 protein-coding 2965 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Trim65 A4FUV9 A4FUW0 Q8BFW4 Q8BJT1 XM_017314619.1	1..2900 99.9%	- 11	Tmem94 B1AT96 B1AT97 B1AT98 B1ATA0 Q1LZK8 Q3U2K2 Q7TSH8 Q9CV08 XM_006534271.1	2901..2943 99.9%	- 11	1 0 0	exon-intron
5 Mus musculus	BC148215 ANNOTATION OF CHIMERA FUSION GenBank ID: BC148215 FASTA Head Gene (1) Alignment: Sec1 Tail Gene (2) Alignment: Tmem94 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 56546 7 - 45679533 45679558 0 0 71947 11 + 115793774 115795444 5 0 protein-coding 1007 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Sec1 P97353 Q3ZB27 Q496T8 Q8CDC9 XM_017322380.1	1..26 100.0%	- 7	Tmem94 B1AT96 B1AT97 B1AT98 B1ATA0 Q1LZK8 Q3U2K2 Q7TSH8 Q9CV08 XM_006534271.1	14..988 100.0%	+ 11	2 1 0	intron-intron

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