Search Database Collection

Result for the search of Gene Name/NCBI ID(s): 'Tcra'

Total of fusion sequences: 36 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

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Organism

Fusion:
Graphical View,
Annotation,
PPI network

Head Gene (1)

Tail Gene (2)

Rank,
Deviation:
Eloc_(x)
Sloc_(y)

Fusion type RNA

Hi-C,
RNAseq,
Mass-spec
evidences

Cancer
Breakpoint,
PubMed(s)

Name(s)₁,
transcript

Start₁..End₁
Ident₁%

Strand₁
Chrom₁

Name(s)₂,
transcript

Start₂..End₂
Ident₂%

Strand₂
Chrom₂

4,5,6

7,19

9,10,11

12,25

13,14,15

1
Mus musculus

BC058093

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC058093 FASTA
UniProtKB: Q920Q2 DNA repair protein REV1 (EC 2.7.7.-) (Rev1-like terminal deoxycytidyl transferase)
Fusion Gene(s): Rev1 Rev1l

Head Gene (1) Alignment: Rev1								Tail Gene (2) Alignment: Tcra								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
56210	1	-	38052786	38129662	24	1	protein-coding	21473	14	+	53741574	53741594	0	0		4280	mm10

Updated: 2019-06-11
Owner: ChiTaRS

Rev1

XM_006496156.3

1..4262

100.0%

Tcra
P01849

4256..4276

100.0%

exon-intron

2
Mus musculus

BC019448

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC019448 FASTA
UniProtKB: Q8VCQ3 Nuclear receptor-binding factor 2 (NRBF-2)
Fusion Gene(s): Nrbf2

Head Gene (1) Alignment: Nrbf2								Tail Gene (2) Alignment: Tcra								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
641340	10	-	67266689	67285281	4	1		21473	14	-	52860988	52862752	0	0		1808	mm10

Updated: 2019-06-15
Owner: ChiTaRS

Nrbf2

NM_001036293.2

1..1789

99.9%

Tcra
P01849

34..1799

99.2%

exon-intron

3
Mus musculus

BC055042

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC055042 FASTA
UniProtKB: P35282 Ras-related protein Rab-21 (Rab-12)
Fusion Gene(s): Rab21

Head Gene (1) Alignment: Rab21								Tail Gene (2) Alignment: Tcra								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
216344	10	-	115289862	115315591	7	1		21473	14	-	53629674	53630066	0	0		1856	mm10

Updated: 2019-06-15
Owner: ChiTaRS

Rab21

NM_024454.1

1..1824

100.0%

Tcra
P01849

1822..1856

100.0%

exon-intron

4
Mus musculus

U86730

ANNOTATION OF CHIMERA FUSION

GenBank ID: U86730 FASTA

Head Gene (1) Alignment: Tcra								Tail Gene (2) Alignment: Traj31								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
21473	14	+	53616883	53616916	0	0		100124358	14	+	54187902	54187950	1	1		81	mm10

Updated: 2019-06-16
Owner: ChiTaRS

Tcra
P01849

1..34

97.1%

Traj31
A0A0G2JDF0

33..81

100.0%

65535

intron-exon

5
Mus musculus

U86723

ANNOTATION OF CHIMERA FUSION

GenBank ID: U86723 FASTA

Head Gene (1) Alignment: Tcra								Tail Gene (2) Alignment: Traj31								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
21473	14	+	52845010	52845043	0	0		100124358	14	+	54187902	54187950	1	1		81	mm10

Updated: 2019-06-16
Owner: ChiTaRS

Tcra
P01849

1..34

100.0%

Traj31
A0A0G2JDF0

33..81

100.0%

65535

intron-exon

6
Mus musculus

M26426

ANNOTATION OF CHIMERA FUSION

GenBank ID: M26426 FASTA

Head Gene (1) Alignment: Tcra								Tail Gene (2) Alignment: Tcrd								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
21473	14	+	53778762	53778866	0	0		110066	14	+	54079207	54079213	0	0		180	mm10

Updated: 2019-06-15
Owner: ChiTaRS

Tcra
P01849

1..105

97.1%

Tcrd

106..112

97.1%

65535

31735

intron-intron

7
Mus musculus

AI448720

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI448720 FASTA

Head Gene (1) Alignment: Tcrd								Tail Gene (2) Alignment: Tcra								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
110066	14	+	54110634	54110940	0	0		21473	14	+	54110942	54110990	0	0		356	mm10

Updated: 2019-06-16
Owner: ChiTaRS

Tcrd

1..307

100.0%

Tcra
P01849

308..356

100.0%

43968

intron-intron

8
Mus musculus

BF730146

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF730146 FASTA

Head Gene (1) Alignment: Tcra								Tail Gene (2) Alignment: Tcrd								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
21473	14	+	54154894	54154908	0	0		110066	14	+	54154910	54155245	0	0		363	mm10

Updated: 2019-06-12
Owner: ChiTaRS

Tcra
P01849

6..20

99.5%

Tcrd

21..354

99.5%

43968

intron-intron

9
Mus musculus

CB174301

ANNOTATION OF CHIMERA FUSION

GenBank ID: CB174301 FASTA

Head Gene (1) Alignment: Tcra								Tail Gene (2) Alignment: Olfr1509								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
21473	14	+	52443086	52443998	0	0		57271	14	+	52450394	52450625	1	1		408	mm10

Updated: 2019-06-16
Owner: ChiTaRS

Tcra
P01849

10..176

100.0%

Olfr1509

NM_020514.2

177..408

100.0%

5384

intron-exon

10
Mus musculus

CB173663

ANNOTATION OF CHIMERA FUSION

GenBank ID: CB173663 FASTA

Head Gene (1) Alignment: Tcra								Tail Gene (2) Alignment: Olfr1509								Qsize	UCSC Version
Location:					exons		highlight₁	Location:					exons		highlight₂
Entrez GeneID₁	chromo- some₁	strand₁	start_loc₁	end_loc₁	total₁	overlap₁	highlight₁	Entrez GeneID₂	chromo- some₂	strand₂	start_loc₂	end_loc₂	total₂	overlap₂	highlight₂
18	19	7	20	21	22	23	-	24	25	12	26	27	28	29	-	30	31
21473	14	+	52449353	52449382	0	0		57271	14	+	52450394	52450884	1	1		533	mm10

Updated: 2019-06-16
Owner: ChiTaRS

Tcra
P01849

13..42

100.0%

Olfr1509

NM_020514.2

43..533

100.0%

5384

intron-exon

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