Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'TSPAN13'

Total of fusion sequences: 7 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: AK000631 FASTA
UniProtKB: Q9NWT1 p21-activated protein kinase-interacting protein 1 (PAK/PLC-interacting protein 1) (hPIP1) (PAK1-interacting protein 1) (WD repeat-containing protein 84)
Fusion Gene(s): PAK1IP1 PIP1 WDR84
Head Gene (1) Alignment: TSPAN13 | OMIM: 613139 Tail Gene (2) Alignment: PAK1IP1 | OMIM: 607811 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270757+167836171678367061tumor suppressor,
protein-coding		550036+1069495710709739101protein-coding 1554 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Tetraspannin (PF00335, IPR018499) 208 153 337 4e-21 61.900 Tetraspanin family
WD40 (PF00400, IPR001680, SM00320) 38 447 485 2.7e-05 11.400 WD domain, G-beta repeat
ANAPC4_WD40 (PF12894, IPR024977) 92 555 632 0.0069 3.000 Anaphase-promoting complex subunit 4 WD40 domain
Updated: 2019-02-20
Owner: ChiTaRS
NM_014399.3		1..54
100.0%		+
7
XM_005249204.2		51..1541
100.0%		+
6		1
0
0		exon-exon
2
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: AK225516 FASTA
Head Gene (1) Alignment: TSPAN13 | OMIM: 613139 Tail Gene (2) Alignment: PAK1IP1 | OMIM: 607811 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270757+167836171678367061tumor suppressor,
protein-coding		550036+1069495710709739101protein-coding 1554 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Tetraspannin (PF00335, IPR018499) 208 153 337 4e-21 61.900 Tetraspanin family
WD40 (PF00400, IPR001680, SM00320) 38 447 485 2.7e-05 11.400 WD domain, G-beta repeat
ANAPC4_WD40 (PF12894, IPR024977) 92 555 632 0.0069 3.000 Anaphase-promoting complex subunit 4 WD40 domain
Updated: 2019-02-20
Owner: ChiTaRS
NM_014399.3		1..54
100.0%		+
7
XM_005249204.2		51..1541
100.0%		+
6		1
0
0		exon-exon
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: EC574411 FASTA
Head Gene (1) Alignment: DLEU1 | OMIM: 605765 Tail Gene (2) Alignment: TSPAN13 | OMIM: 613139 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1030113-504132545041327500tumor suppressor,
ncRNA		270757+167840411678412811tumor suppressor,
protein-coding		 148 hg38
Updated: 2019-03-21
Owner: ChiTaRS
NR_109974.1		44..65
100.0%		-
13
NM_014399.3		61..147
100.0%		+
7		1
0
0		intron-exon
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: EC573435 FASTA
Head Gene (1) Alignment: PID1 | OMIM: 612930 Tail Gene (2) Alignment: TSPAN13 | OMIM: 613139 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
550222-22916791422916793700protein-coding270757+167843031678440111tumor suppressor,
protein-coding		 117 hg38
Updated: 2019-03-27
Owner: ChiTaRS
NM_001330158.1		10..32
100.0%		-
2
NM_014399.3		18..117
97.0%		+
7		1
0
0		intron-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA507494 FASTA
Head Gene (1) Alignment: ZMYM5 | OMIM: 616443 Tail Gene (2) Alignment: TSPAN13 | OMIM: 613139 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
920513-198581971985859700protein-coding270757-167842381678448011tumor suppressor,
protein-coding		 273 hg38
Updated: 2019-04-14
Owner: ChiTaRS
XM_011535309.2		1..53
97.5%		-
13
NM_014399.3		31..273
99.2%		-
7		1
0
0		intron-exon
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW843101 FASTA
Head Gene (1) Alignment: TSPAN13 | OMIM: 613139 Tail Gene (2) Alignment: RNF130 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270757-167842951678442561tumor suppressor,
protein-coding		558195-17995563217996351491protein-coding 203 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Tetraspannin (PF00335, IPR018499) 208 153 337 4.1e-21 61.900 Tetraspanin family
Updated: 2019-02-20
Owner: ChiTaRS
NM_014399.3		1..130
99.3%		-
7
NM_018434.5		122..203
98.8%		-
5		1
0
0		exon-exon
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BM014907 FASTA
Head Gene (1) Alignment: TSPAN13 | OMIM: 613139 Tail Gene (2) Alignment: RAB38 | OMIM: 606281 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270757+167839231678448011tumor suppressor,
protein-coding		2368211-878868218788684400oncogene,
protein-coding		 581 hg38
Updated: 2019-06-06
Owner: ChiTaRS
NM_014399.3		1..558
98.6%		+
7
XM_017017456.2		559..581
100.0%		-
11		1
0
0		exon-intron

T O P