Result for the search of Gene Name/NCBI ID(s): 'TSC22D3'

Total of fusion sequences: 14 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs CT004483 ANNOTATION OF CHIMERA FUSION GenBank ID: CT004483 FASTA Head Gene (1) Alignment: CXCR4 | OMIM: 162643 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 7852 2 - 136118046 136118138 3 1 protein-coding 1831 X - 107714214 107715950 5 1 protein-coding 708 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TSC22 (PF01166, IPR000580) 57 57 113 1.1e-31 95.200 TSC-22/dip/bun family Updated: 2019-02-21 Owner: ChiTaRS	CXCR4 A0A0U3FJG0 A0A0U3GXA9 P61073 Q5MIL4 NM_001348059.1	1..93 100.0%	- 2	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	94..681 100.0%	- X	1 0 0	exon-exon		BREAKPOINTs 27903646
2 Homo Sapiens	SplGraphs DB271724 ANNOTATION OF CHIMERA FUSION GenBank ID: DB271724 FASTA Head Gene (1) Alignment: PTRF | OMIM: 603198 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 284119 17 - 42422875 42423256 2 1 protein-coding 1831 X - 107716690 107716872 1 1 protein-coding 569 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to PTRF_SDPR (PF15237, IPR026752) 246 101 136 1.6e-08 20.600 PTRF/SDPR family Updated: 2019-02-21 Owner: ChiTaRS	PTRF Q6NZI2 XM_005257242.4	1..382 100.0%	- 17	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 NM_004089.3	379..561 100.0%	- X	1 0 0	exon-exon
3 Homo Sapiens	SplGraphs AW801061 ANNOTATION OF CHIMERA FUSION GenBank ID: AW801061 FASTA Head Gene (1) Alignment: TSC22D3 | OMIM: 300506 Tail Gene (2) Alignment: RHOBTB2 | OMIM: 607352 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1831 X - 107713787 107713910 1 1 protein-coding 23221 8 + 23017779 23017905 1 1 oncogene, tumor suppressor 270 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TSC22 (PF01166, IPR000580) 57 246 302 1.3e-30 91.900 TSC-22/dip/bun family Updated: 2019-02-20 Owner: ChiTaRS	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	16..139 99.2%	- X	RHOBTB2 E5RI44 Q9BYZ6 NM_001160036.1	133..259 100.0%	+ 8	1 0 0	exon-exon
4 Homo Sapiens	BQ645838 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ645838 FASTA Head Gene (1) Alignment: TSC22D3 | OMIM: 300506 Tail Gene (2) Alignment: RPL28 | OMIM: 603638 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1831 X + 107750229 107750261 3 0 protein-coding 6158 19 - 55386349 55388375 4 1 protein-coding 990 hg38 Updated: 2019-02-21 Owner: ChiTaRS	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 NM_001015881.1	14..42 96.5%	+ X	RPL28 H0YKD8 H0YLP6 H0YMF4 P46779 NM_000991.4	39..504 100.0%	- 19	1 0 0	intron-exon	MCF7
5 Homo Sapiens	BM145370 ANNOTATION OF CHIMERA FUSION GenBank ID: BM145370 FASTA Head Gene (1) Alignment: DCDC1 | OMIM: 608062 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 341019 11 + 31037433 31037906 0 0 protein-coding 1831 X + 107713225 107713700 1 1 protein-coding 486 hg38 Updated: 2019-03-03 Owner: ChiTaRS	DCDC1 B6ZDN3 H0Y2Q8 H7C298 M0R2J8 XM_024448473.1	1..27 100.0%	+ 11	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	11..486 97.7%	+ X	1 0 0	intron-exon
6 Homo Sapiens	BM153286 ANNOTATION OF CHIMERA FUSION GenBank ID: BM153286 FASTA Head Gene (1) Alignment: DCDC1 | OMIM: 608062 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 341019 11 + 31037433 31037906 0 0 protein-coding 1831 X + 107713225 107713851 1 1 protein-coding 636 hg38 Updated: 2019-03-03 Owner: ChiTaRS	DCDC1 B6ZDN3 H0Y2Q8 H7C298 M0R2J8 XM_024448473.1	1..27 100.0%	+ 11	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	11..636 99.9%	+ X	1 0 0	intron-exon
7 Homo Sapiens	AA099067 ANNOTATION OF CHIMERA FUSION GenBank ID: AA099067 FASTA Head Gene (1) Alignment: TSC22D3 | OMIM: 300506 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1831 X + 107714020 107714105 1 1 protein-coding 1831 X - 107713692 107714009 5 1 protein-coding 399 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TSC22 (PF01166, IPR000580) 57 246 302 6.6e-31 92.800 TSC-22/dip/bun family Updated: 2019-02-20 Owner: ChiTaRS	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	1..86 100.0%	+ X	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	82..399 99.7%	- X	2 0 21	exon-exon
8 Homo Sapiens	AA098994 ANNOTATION OF CHIMERA FUSION GenBank ID: AA098994 FASTA Head Gene (1) Alignment: TSC22D3 | OMIM: 300506 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1831 X + 107713710 107714009 1 1 protein-coding 1831 X - 107714041 107714105 5 1 protein-coding 362 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TSC22 (PF01166, IPR000580) 57 246 302 8.7e-31 92.400 TSC-22/dip/bun family Updated: 2019-02-20 Owner: ChiTaRS	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	1..299 100.0%	+ X	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	295..359 100.0%	- X	2 0 21	exon-exon
9 Homo Sapiens	GW493342 ANNOTATION OF CHIMERA FUSION GenBank ID: GW493342 FASTA Head Gene (1) Alignment: ZNF559-ZNF177 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 100529215 19 + 9339766 9339960 0 0 protein-coding 1831 X + 107713225 107713615 1 1 protein-coding 414 hg38 Updated: 2019-03-03 Owner: ChiTaRS	ZNF559-ZNF177 A0A0A6YYI6 S4R342 S4R365 S4R367 S4R3A1 S4R3B1 S4R3H7 S4R3Q2 S4R3T9 S4R401 S4R422 NM_001172650.2	1..33 100.0%	+ 19	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	28..414 99.0%	+ X	1 0 0	intron-exon
10 Homo Sapiens	BG940720 ANNOTATION OF CHIMERA FUSION GenBank ID: BG940720 FASTA Head Gene (1) Alignment: LOC105373153 Tail Gene (2) Alignment: TSC22D3 | OMIM: 300506 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105373153 X + 33992971 33993003 0 0 ncRNA 1831 X + 107713221 107713525 1 1 protein-coding 334 hg38 Updated: 2019-04-18 Owner: ChiTaRS	LOC105373153 XR_950542.3	3..35 100.0%	+ X	TSC22D3 D6R8Z7 D6R9J1 D6RAX8 D6RBL1 D6RCK9 D6RD37 D6RD92 D6RDZ7 D6RDZ9 E7EWD5 Q5JRJ0 Q5JRJ2 Q99576 XM_005262099.1	30..334 99.1%	+ X	1 0 0	intron-exon

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