Result for the search: Gene Name/NCBI ID(s): 'TRAFD1'

Total of fusion sequences: 5 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	-	16	17
Homo Sapiens	BF928333 ANNOTATION OF CHIMERA FUSION GenBank ID: BF928333 FASTA Head Gene (1) Alignment: TRAFD1 | OMIM: 613197 Tail Gene (2) Alignment: TRAFD1 | OMIM: 613197 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10906 12 + 112145585 112145662 7 1 protein-coding 10906 12 - 112148076 112148208 5 1 protein-coding 211 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to DM (PF00751, IPR001275, SM00301) 47 9 53 0.0098 2.200 DM DNA binding domain zf-C2H2 (PF00096, IPR007087, SM00355) 23 38 59 9.5e-05 9.300 Zinc finger, C2H2 type zf-C2H2_4 (PF13894) 24 58 82 0.037 1.600 C2H2-type zinc finger zf-Di19 (PF05605, IPR008598) 54 408 440 0.0053 3.400 Drought induced 19 protein (Di19), zinc-binding Updated: 2019-02-20 Owner: ChiTaRS	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9 NM_006700.2	8..84 98.8%	+ 12	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9 NM_006700.2	79..211 99.3%	- 12	0 7947 5385	exon-exon
Homo Sapiens	CN277025 ANNOTATION OF CHIMERA FUSION GenBank ID: CN277025 FASTA Head Gene (1) Alignment: TRAFD1 | OMIM: 613197 Tail Gene (2) Alignment: TRAFD1 | OMIM: 613197 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10906 12 - 112153461 112153514 12 1 protein-coding 10906 12 + 112153499 112153609 1 1 protein-coding 178 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to DM (PF00751, IPR001275, SM00301) 47 214 257 0.024 0.900 DM DNA binding domain zf-C2H2_4 (PF13894) 24 243 264 0.00068 7.000 C2H2-type zinc finger zf-TRAF (PF02176, IPR001293) 60 262 310 8.7e-05 9.500 TRAF-type zinc finger zf-C2HC_2 (PF13913) 25 495 518 0.0034 3.700 zinc-finger of a C2HC-type zf-Di19 (PF05605, IPR008598) 54 572 603 0.0093 2.600 Drought induced 19 protein (Di19), zinc-binding Updated: 2019-01-25 Owner: ChiTaRS	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9 NM_006700.2	12..65 100.0%	- 12	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9 NM_006700.2	59..169 99.1%	+ 12	0 7947 5385	exon-exon
Homo Sapiens	R45593 ANNOTATION OF CHIMERA FUSION GenBank ID: R45593 FASTA Head Gene (1) Alignment: GATAD2B | OMIM: 614998 Tail Gene (2) Alignment: TRAFD1 | OMIM: 613197 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57459 1 - 153908776 153908799 11 0 protein-coding 10906 12 - 112153263 112153599 1 1 protein-coding 396 hg38 Updated: 2019-02-08 Owner: ChiTaRS	GATAD2B A0A0U1RR30 A0A0U1RR34 A0A0U1RRK3 A0A0U1RRM1 A0A1B0GVS4 A0A1B0GW07 Q8WXI9 XM_005245364.4	1..24 100.0%	- 1	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9 NM_006700.2	17..356 97.3%	- 12	1 0 0	intron-exon
Homo Sapiens	FN163143 ANNOTATION OF CHIMERA FUSION GenBank ID: FN163143 FASTA Head Gene (1) Alignment: TRAFD1 | OMIM: 613197 Tail Gene (2) Alignment: AL353615.1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10906 12 + 112152907 112152973 5 0 protein-coding 9 - 135353362 135353381 1 0 73 hg38 Updated: 2018-09-05 Owner: ChiTaRS	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9	2..63 98.4%	+ 12	AL353615.1	50..69 100.0%	- 9	1 0 0	intron-intron
Homo Sapiens	AA535414 ANNOTATION OF CHIMERA FUSION GenBank ID: AA535414 FASTA Head Gene (1) Alignment: DEPDC5 | OMIM: 614191 Tail Gene (2) Alignment: TRAFD1 | OMIM: 613197 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9681 22 + 31782135 31782157 0 0 protein-coding 10906 12 - 112153176 112153604 1 1 protein-coding 445 hg38 Updated: 2019-04-14 Owner: ChiTaRS	DEPDC5 A0A2R8Y5E9 A0A2R8Y5K9 A0A2R8Y5P2 A0A2R8Y5T1 A0A2R8Y5V3 A0A2R8Y6F4 A0A2R8Y6H3 A0A2R8Y6H8 A0A2R8Y6V4 A0A2R8Y6Y2 A0A2R8Y721 A0A2R8Y7C9 A0A2R8Y7U0 A0A2R8Y7U6 A0A2R8Y7X0 A0A2R8Y842 A0A2R8YEI8 A0A2R8YET0 A0A2R8YEW8 A0A2R8YF97 A0A2R8YFS1 C9JGS4 F8WAX3 H0Y770 H7C1T0 H7C3I3 O75140 XR_001755389.1	1..23 100.0%	+ 22	TRAFD1 A0A024RBK4 F8VNX8 F8VVF3 F8VWK2 L8E7W3 O14545 S4R2Z9 NM_001143906.1	21..445 98.4%	- 12	1 0 0	intron-exon

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