Result for the search of Gene Name/NCBI ID(s): 'TATDN2'

Total of fusion sequences: 7 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	BF218582 ANNOTATION OF CHIMERA FUSION GenBank ID: BF218582 FASTA Head Gene (1) Alignment: TATDN2 Tail Gene (2) Alignment: GHRLOS Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9797 3 + 10280708 10280742 8 1 protein-coding 100126793 3 + 10280744 10281214 7 0 ncRNA 551 hg38 Updated: 2019-01-04 Owner: ChiTaRS	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	1..35 97.3%	+ 3	GHRLOS NR_073566.1	36..513 97.3%	+ 3	2 16 16	exon-intron	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BF218582 TATDN2 3 10280741 10280742 10278316 2425 GHRLOS 3 10280744 10280745 10278316 2428 GM12878 (CVCL_7526) 25497547 BF218582 TATDN2 3 10280741 10280742 10278316 2425 GHRLOS 3 10280744 10280745 10288316 7571 GM12878 (CVCL_7526) 25497547 BF218582 TATDN2 3 10280741 10280742 10288316 7574 GHRLOS 3 10280744 10280745 10288316 7571 K-562 (CVCL_0004) 25497547
2 Homo Sapiens	BF245839 ANNOTATION OF CHIMERA FUSION GenBank ID: BF245839 FASTA Head Gene (1) Alignment: TATDN2 Tail Gene (2) Alignment: GHRLOS Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9797 3 + 10280708 10280758 8 1 protein-coding 100126793 3 + 10280760 10281206 7 0 ncRNA 554 hg38 Updated: 2019-01-04 Owner: ChiTaRS	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	1..50 98.2%	+ 3	GHRLOS NR_073566.1	51..502 98.2%	+ 3	2 16 16	exon-intron	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BF245839 TATDN2 3 10280757 10280758 10278316 2441 GHRLOS 3 10280760 10280761 10278316 2444 GM12878 (CVCL_7526) 25497547 BF245839 TATDN2 3 10280757 10280758 10278316 2441 GHRLOS 3 10280760 10280761 10288316 7555 GM12878 (CVCL_7526) 25497547 BF245839 TATDN2 3 10280757 10280758 10288316 7558 GHRLOS 3 10280760 10280761 10288316 7555 K-562 (CVCL_0004) 25497547
3 Homo Sapiens	BI026139 ANNOTATION OF CHIMERA FUSION GenBank ID: BI026139 FASTA Head Gene (1) Alignment: TATDN2 Tail Gene (2) Alignment: TATDN2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9797 3 - 10280140 10280274 8 1 protein-coding 9797 3 + 10280325 10280637 1 1 protein-coding 442 hg38 Updated: 2019-02-02 Owner: ChiTaRS	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	4..136 99.3%	- 3	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	130..442 100.0%	+ 3	1 0 0	exon-exon	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BI026139 TATDN2 3 10280268 10280274 10278316 1952 TATDN2 3 10280325 10280331 10278316 2009 GM12878 (CVCL_7526) 25497547 BI026139 TATDN2 3 10280268 10280274 10278316 1952 TATDN2 3 10280325 10280331 10288316 7985 GM12878 (CVCL_7526) 25497547 BI026139 TATDN2 3 10280268 10280274 10288316 8042 TATDN2 3 10280325 10280331 10288316 7985 K-562 (CVCL_0004) 25497547
4 Homo Sapiens	EC556392 ANNOTATION OF CHIMERA FUSION GenBank ID: EC556392 FASTA Head Gene (1) Alignment: NSMCE2 Tail Gene (2) Alignment: TATDN2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 286053 8 + 125210716 125210754 0 0 protein-coding 9797 3 + 10281048 10281128 1 1 protein-coding 98 hg38 Updated: 2019-03-25 Owner: ChiTaRS	NSMCE2 A0A024R9J6 A0A087WTZ8 E5RFJ1 E5RG00 E5RHW9 E5RIM1 E5RK09 H0YB96 Q96MF7 NR_146191.1	1..26 96.2%	+ 8	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	20..95 100.0%	+ 3	1 0 0	intron-exon
5 Homo Sapiens	BF216850 ANNOTATION OF CHIMERA FUSION GenBank ID: BF216850 FASTA Head Gene (1) Alignment: TATDN2 Tail Gene (2) Alignment: CCDC47 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9797 3 + 10280708 10281215 8 1 protein-coding 57003 17 + 63769245 63769623 1 0 protein-coding 534 hg38 Updated: 2019-01-12 Owner: ChiTaRS	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	1..506 100.0%	+ 3	CCDC47 A0A087WYW6 J3KRX4 Q96A33 XM_005257527.2	506..534 100.0%	+ 17	1 0 0	exon-intron
6 Homo Sapiens	BF216244 ANNOTATION OF CHIMERA FUSION GenBank ID: BF216244 FASTA Head Gene (1) Alignment: TATDN2 Tail Gene (2) Alignment: CATSPER2P1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9797 3 + 10280708 10281213 8 1 protein-coding 440278 15 + 43731880 43731912 8 0 pseudo 548 hg38 Updated: 2019-01-12 Owner: ChiTaRS	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	1..508 97.6%	+ 3	CATSPER2P1 ENST00000439564	508..539 96.9%	+ 15	1 0 0	exon-intron
7 Homo Sapiens	AW901367 ANNOTATION OF CHIMERA FUSION GenBank ID: AW901367 FASTA Head Gene (1) Alignment: CACNA1G | OMIM: 604065 Tail Gene (2) Alignment: TATDN2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8913 17 - 50626249 50626431 38 1 protein-coding 9797 3 - 10260295 10260486 6 1 protein-coding 370 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Ion_trans (PF00520, IPR005821) 245 80 406 8.3e-83 263.400 Ion transport protein SieB (PF14163, IPR025982) 147 342 423 0.0002 7.100 Super-infection exclusion protein B DUF3678 (PF12435, IPR022146) 35 456 490 0.00016 7.200 Protein of unknown function (DUF3678) SelP_N (PF04592, IPR007671) 233 469 532 0.0017 3.900 Selenoprotein P, N terminal region MscL (PF01741, IPR001185) 121 1795 1879 0.002 4.700 Large-conductance mechanosensitive channel, MscL Updated: 2019-02-20 Owner: ChiTaRS	CACNA1G A0A0B4J1X2 H0YAN0 I3L2W8 O43497 X5D9G8 X5D9M1 NM_018896.4	1..183 99.5%	- 17	TATDN2 A0A024R2F3 H7BZJ2 Q93075 NM_014760.3	179..370 100.0%	- 3	1 0 0	exon-exon

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