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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Stxbp1'

Total of fusion sequences: 7 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ042312 FASTA
Head Gene (1) Alignment: Stxbp1 Tail Gene (2) Alignment: Srrm2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
209102-327884383278888411protein-coding7595617+238222112382242111protein-coding 650 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_001113569.1		1..447
100.0%		-
2
XM_017317713.1		440..650
100.0%		+
17		2
8
0		exon-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BQ042312 Stxbp1 2 32788877 32788884 32790000 1116 Srrm2 17 23822211 23822218 23820000 2211 ES-C57BL/6 (CVCL_5746) 28802249
2
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ044569 FASTA
Head Gene (1) Alignment: Stxbp1 Tail Gene (2) Alignment: Srrm2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
209102-327884383278888411protein-coding7595617+238222112382242911protein-coding 659 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_001113569.1		1..448
99.4%		-
2
XM_017317713.1		441..659
100.0%		+
17		2
8
0		exon-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BQ044569 Stxbp1 2 32788877 32788884 32790000 1116 Srrm2 17 23822211 23822218 23820000 2211 ES-C57BL/6 (CVCL_5746) 28802249
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: W53596 FASTA
Head Gene (1) Alignment: Stxbp1 Tail Gene (2) Alignment: Stxbp1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
209102-327892143278934711protein-coding209102-327893403278963011protein-coding 421 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_001113569.1		1..134
100.0%		-
2
NM_001113569.1		128..418
100.0%		-
2		1
0
0		exon-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
W53596 Stxbp1 2 32789341 32789347 32790000 653 Stxbp1 2 32789340 32789346 32790000 654 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BI731071 FASTA
Head Gene (1) Alignment: Cpeb3 Tail Gene (2) Alignment: Stxbp1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
20892219-371748163717800721protein-coding209102-328149103284711471protein-coding 829 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XM_006526831.3		1..270
99.3%		-
19
NM_001113569.1		260..829
98.8%		-
2		1
0
0		exon-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BI731071 Cpeb3 19 37177997 37178007 37170000 7997 Stxbp1 2 32814910 32814920 32810000 4910 ES-C57BL/6 (CVCL_5746) 28802249
BI731071 Cpeb3 19 37177997 37178007 37170000 7997 Stxbp1 2 32814910 32814920 32820000 5080 Patski (CVCL_Y494) 27432957
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC031728 FASTA
UniProtKB: O08599 Syntaxin-binding protein 1 (Protein unc-18 homolog 1) (Unc18-1) (Protein unc-18 homolog A) (Unc-18A)
Fusion Gene(s): Stxbp1
Head Gene (1) Alignment: Stxbp1 Tail Gene (2) Alignment: Copg2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
209102-3278796132847164201protein-coding541606-308535863085362500protein-coding 3617 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_001113569.1		1..3578
100.0%		-
2
XR_001785154.1		3574..3613
95.0%		-
6		1
0
0		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BU757003 FASTA
Head Gene (1) Alignment: Rragd Tail Gene (2) Alignment: Stxbp1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
521874+330060083300621600209102-327971333280736660protein-coding 441 mm10
Updated: 2019-06-12
Owner: ChiTaRS
NM_027491.2		2..210
97.0%		+
4
NM_001113569.1		42..424
95.4%		-
2		1
0
0		intron-intron
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ265494 FASTA
Head Gene (1) Alignment: Stxbp1 Tail Gene (2) Alignment: Pappa Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
209102+328373723283768400protein-coding184914-652911876529134700protein-coding 403 mm10
Updated: 2019-06-12
Owner: ChiTaRS
NM_001113569.1		1..148
97.3%		+
2		 Pappa
Q8R4K8
NM_021362.1		129..223
97.3%		-
4		1
0
0		intron-intron

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