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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Smim14'

Total of fusion sequences: 42 (from 12,143,238 parsed EST/mRNAs. Last update: 2021-04-05 16:54:11)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF723084 FASTA
Head Gene (1) Alignment: Smim14 Tail Gene (2) Alignment: Ube2k Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
685525-654927366549290010protein-coding533235+655659886559454651protein-coding 633 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_133697.3		1..165
100.0%		-
5
NM_016786.4		165..628
98.5%		+
5		1
0
0		intron-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BF723084 Smim14 5 65492900 65492900 65490000 2900 Ube2k 5 65565988 65565988 65560000 5988 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
BF723084 Smim14 5 65492900 65492900 65490000 2900 Ube2k 5 65565988 65565988 65570000 4012 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
BF723084 Smim14 5 65492900 65492900 65500000 7100 Ube2k 5 65565988 65565988 65560000 5988 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
BF723084 Smim14 5 65492900 65492900 65500000 7100 Ube2k 5 65565988 65565988 65570000 4012 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
2
Mus musculus		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: BM947701 FASTA
Head Gene (1) Alignment: Dzank1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2416882-14447482914447497611protein-coding685525-654653916546594000protein-coding 697 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_172859.2		1..149
98.0%		-
2
XM_006504083.2		148..697
100.0%		-
5		1
0
0		exon-intron
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC053425 FASTA
UniProtKB: Q9ESP1 Stromal cell-derived factor 2-like protein 1 (SDF2-like protein 1)
Fusion Gene(s): Sdf2l1
Head Gene (1) Alignment: Sdf2l1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
6413616-171301381713236531protein-coding685525-654854826548570000protein-coding 1173 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Sdf2l1
Q9ESP1
NM_022324.3		1..1090
100.0%		-
16
XM_006504083.2		1088..1156
96.3%		-
5		1
0
0		exon-intron
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC098243 FASTA
UniProtKB: Q4QQJ7 Loxl1 protein
Fusion Gene(s): Loxl1
Head Gene (1) Alignment: Loxl1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
169499-582886015831318471685525-654854826548552500protein-coding 1083 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_010729.3		9..1043
100.0%		-
9
XM_006504083.2		1043..1083
100.0%		-
5		1
0
0		exon-intron
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC049570 FASTA
UniProtKB: Q9CPY8 Atp8b3 protein (MCG13387) (Phospholipid-transporting ATPase IK)
Fusion Gene(s): Atp8b3 mCG_13387
Head Gene (1) Alignment: Atp8b3 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
6733110-805355338053909031685525-654854826548570100protein-coding 631 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_026094.3		1..524
100.0%		-
10
XM_006504083.2		522..616
97.6%		-
5		1
0
0		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: AF077349 FASTA
UniProtKB: O70201 Baculoviral IAP repeat-containing protein 5 (Apoptosis inhibitor 4) (Apoptosis inhibitor survivin) (TIAP)
Fusion Gene(s): Birc5 Api4 Iap4
Head Gene (1) Alignment: Birc5 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1179911+11784933611785573941685525-654855046548571100protein-coding 924 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_009689.2		1..869
100.0%		+
11
XM_006504083.2		855..924
97.1%		-
5		1
0
0		exon-intron
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV050219 FASTA
Head Gene (1) Alignment: Spink1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2073018-437280824373719741685525-654854826548570000protein-coding 961 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Spink1
P09036
NM_009258.5		19..387
99.2%		-
18
XM_006504083.2		386..522
96.3%		-
5		5
5
0		exon-intron
8
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV073619 FASTA
Head Gene (1) Alignment: Spink1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2073018-437280824373719541685525-654854856548570000protein-coding 989 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Spink1
P09036
NM_009258.5		21..388
99.8%		-
18
XM_006504083.2		387..538
96.2%		-
5		5
2
3		exon-intron
9
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV073298 FASTA
Head Gene (1) Alignment: Spink1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2073018-437280824373719241685525-654854826548570000protein-coding 1015 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Spink1
P09036
NM_009258.5		20..383
99.5%		-
18
XM_006504083.2		382..582
96.3%		-
5		5
0
0		exon-intron
10
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV071262 FASTA
Head Gene (1) Alignment: Spink1 Tail Gene (2) Alignment: Smim14 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2073018-437280824373719241685525-654855056548570000protein-coding 974 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Spink1
P09036
NM_009258.5		20..383
99.5%		-
18
XM_006504083.2		382..452
97.0%		-
5		5
0
23		exon-intron

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