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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Smchd1'

Total of fusion sequences: 7 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus
SplGraphs
NM_028887.3
1..122
99.2%
-
17

NM_019976.3
118..483
99.8%
+
3
2
24
0
exon-exon
2
Mus musculus
SplGraphs
XM_017321122.1
22..633
99.9%
-
5

NM_028887.3
625..752
99.3%
-
17
1
0
0
exon-exon
3
Mus musculus

NM_028887.3
1..98
99.0%
-
17

NM_019976.3
94..515
100.0%
+
3
2
24
0
exon-exon
4
Mus musculus
CT010429.2 599..699
96.3%
-
17

NM_028887.3
700..2022
96.3%
-
17
1
0
0
intron-exon
5
Mus musculus
CT010429.2 588..688
96.3%
-
17

NM_028887.3
689..2011
96.3%
-
17
1
0
0
intron-exon
6
Mus musculus

NM_028887.3
2..118
99.8%
-
17

XM_006524788.2
119..441
99.8%
-
17
1
0
0
intron-exon
7
Mus musculus
Atp5b
P56480

NM_016774.3
24..531
99.9%
+
10

NM_028887.3
101..602
95.1%
-
17
1
0
0
exon-intron

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