Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Scarb1'

Total of fusion sequences: 8 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
ChimerDB
NM_022370.3
27..152
100.0%
-
11

NM_005505.4
149..266
100.0%
+
12
1
0
0
exon-exon
2
Homo Sapiens
SplGraphs
NM_005505.4
2..363
99.8%
-
12

NM_021009.6
364..490
100.0%
-
12
1
0
0
exon-exon
3
Homo Sapiens

NM_001437.2
1..2026
100.0%
-
14

NM_005505.4
1991..2041
97.5%
+
12
1
0
0
exon-intron
4
Homo Sapiens

NM_005505.4
1..198
99.2%
+
12
BRI3BP
Q8WY22

NM_080626.5
199..243
99.2%
+
12
1
0
0
intron-intron
5
Homo Sapiens

NM_005505.4
6..121
97.1%
+
12
LOC107985340
XR_001753971.1
44..378
98.9%
+
19
1
0
0
intron-intron
6
Homo Sapiens

XR_001744525.2
3..25
100.0%
-
7

NM_005505.4
23..409
99.8%
+
12
1
0
0
intron-exon
7
Homo Sapiens

NM_005505.4
13..398
100.0%
-
12

NM_021961.5
387..416
96.3%
-
11
1
0
0
exon-intron
8
Homo Sapiens

NM_005505.4
1..22
100.0%
+
12
16..434
100.0%
-
7
1
0
0
intron-intron

T o p