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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'Scarb1'

Total of fusion sequences: 11 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens ChimerDB
NM_022370.3
27..152
100.0%
-
11

NM_005505.4
149..266
100.0%
+
12
1
0
0
exon-exon
Homo SapiensSplGraphs
NM_005505.4
2..363
99.8%
-
12

NM_021009.6
364..490
100.0%
-
12
1
0
0
exon-exon
Homo Sapiens
NM_001437.2
1..2026
100.0%
-
14

NM_005505.4
1991..2041
97.5%
+
12
1
0
0
exon-intron
Homo Sapiens
NM_005505.4
1..198
99.2%
+
12
BRI3BP
Q8WY22

NM_080626.5
199..243
99.2%
+
12
1
0
0
intron-intron
Mus musculus
NM_001162410.1
1..25
100.0%
-
19

NM_016741.2
21..232
99.1%
+
5
1
0
0
intron-exon
Mus musculus
NM_001113209.2
1..182
98.4%
+
4

NM_016741.2
179..253
100.0%
+
5
1
0
0
exon-exon
Homo Sapiens
NM_005505.4
6..121
97.1%
+
12
LOC107985340
XR_001753971.1
44..378
98.9%
+
19
1
0
0
intron-intron
Homo Sapiens
XR_001744525.2
3..25
100.0%
-
7

NM_005505.4
23..409
99.8%
+
12
1
0
0
intron-exon
Homo Sapiens
NM_005505.4
13..398
100.0%
-
12

NM_021961.5
387..416
96.3%
-
11
1
0
0
exon-intron
Homo Sapiens
NM_005505.4
1..22
100.0%
+
12
16..434
100.0%
-
7
1
0
0
intron-intron

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