Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'STAU2'

Total of fusion sequences: 20 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA201993 FASTA
Head Gene (1) Alignment: RNF19A | OMIM: 607119 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
258978-100309864100309974111protein-coding270678-736137607361745391protein-coding 573 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
dsrm (PF00035, IPR014720, SM00358) 67 155 196 1.5e-08 21.600 Double-stranded RNA binding motif
LPP20 (PF02169, IPR024952) 97 363 410 0.0014 5.300 LPP20 lipoprotein
Staufen_C (PF16482, IPR032478) 111 472 540 3.7e-19 55.200 Staufen C-terminal domain
Updated: 2019-02-21
Owner: ChiTaRS
XM_017013302.1		1..111
100.0%		-
8
NM_001164380.1		107..573
99.6%		-
8		1
0
0		exon-exon
2
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL056097 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678-735206477352067200protein-coding270678+735206687352101200protein-coding 371 hg38
Updated: 2019-03-03
Owner: ChiTaRS
NM_001164380.1		7..32
100.0%		-
8
NM_001164380.1		27..371
99.5%		+
8		0
24412
25005		intron-intron

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
DL056097 STAU2 8 73520667 73520672 73517765 2902 STAU2 8 73520668 73520673 73517765 2903 HMEC-1 (CVCL_0307) 25497547
DL056097 STAU2 8 73520667 73520672 73517765 2902 STAU2 8 73520668 73520673 73527765 7092 hTERT-RPE1 (CVCL_4388) 27432957
DL056097 STAU2 8 73520667 73520672 73527765 7093 STAU2 8 73520668 73520673 73527765 7092 hTERT-RPE1 (CVCL_4388) 27432957
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE143523 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678+734795367347970320protein-coding270678-7348040673481979130protein-coding 595 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
dsrm (PF00035, IPR014720, SM00358) 67 18 61 5.3e-08 19.800 Double-stranded RNA binding motif
LPP20 (PF02169, IPR024952) 97 229 275 0.0055 3.400 LPP20 lipoprotein
Staufen_C (PF16482, IPR032478) 111 337 405 1.4e-18 53.400 Staufen C-terminal domain
Updated: 2019-01-29
Owner: ChiTaRS
NM_001164380.1		2..171
95.3%		+
8
NM_001164380.1		168..594
98.9%		-
8		2
0
26		intron-intron

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BE143523 STAU2 8 73479700 73479703 73477765 1935 STAU2 8 73480406 73480409 73487765 7356 hTERT-RPE1 (CVCL_4388) 27432957
BE143523 STAU2 8 73479700 73479703 73487765 8062 STAU2 8 73480406 73480409 73487765 7356 hTERT-RPE1 (CVCL_4388) 27432957
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE143518 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678+734795367347970320protein-coding270678-7348043273481979130protein-coding 588 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
dsrm (PF00035, IPR014720, SM00358) 67 126 189 2.4e-12 33.700 Double-stranded RNA binding motif
LPP20 (PF02169, IPR024952) 97 464 510 0.0052 3.500 LPP20 lipoprotein
Staufen_C (PF16482, IPR032478) 111 572 640 1.3e-18 53.400 Staufen C-terminal domain
Updated: 2019-02-02
Owner: ChiTaRS
NM_001164380.1		24..192
96.5%		+
8
NM_001164380.1		189..588
99.3%		-
8		2
0
26		intron-intron

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BE143518 STAU2 8 73479700 73479703 73477765 1935 STAU2 8 73480432 73480435 73487765 7330 hTERT-RPE1 (CVCL_4388) 27432957
BE143518 STAU2 8 73479700 73479703 73487765 8062 STAU2 8 73480432 73480435 73487765 7330 hTERT-RPE1 (CVCL_4388) 27432957
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AF026146 FASTA
UniProtKB: Q02297 Pro-neuregulin-1, membrane-bound isoform (Pro-NRG1) [Cleaved into: Neuregulin-1 (Acetylcholine receptor-inducing activity) (ARIA) (Breast cancer cell differentiation factor p45) (Glial growth factor) (Heregulin) (HRG) (Neu differentiation factor) (Sensory and motor neuron-derived factor)]
Fusion Gene(s): NRG1 GGF HGL HRGA NDF SMDF
Head Gene (1) Alignment: NRG1 | OMIM: 142445 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
30848+325482903272863261protein-coding270678-736799877368000700protein-coding 1651 hg38
Updated: 2019-03-31
Owner: ChiTaRS
NM_004495.3		11..1646
99.1%		+
8
NM_001164380.1		1631..1651
100.0%		-
8		1
0
0		exon-intron
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ082467 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678-7372553973736062120protein-coding270678-737386877373909420protein-coding 660 hg38
Updated: 2019-02-21
Owner: ChiTaRS
NM_001164380.1		1..373
95.7%		-
8
NM_001164380.1		253..660
100.0%		-
8		0
65535
65535		intron-intron
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI659540 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: STAU2 | OMIM: 605920 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678+735456527354569200protein-coding270678+735450107354542400protein-coding 451 hg38
Updated: 2019-04-13
Owner: ChiTaRS
NM_001164380.1		1..41
97.0%		+
8
NM_001164380.1		36..451
99.1%		+
8		0
24412
25005		intron-intron
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BP357292 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: LOC100130134 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678-736731057374688061protein-coding100130134X-900403179004092822pseudo 582 hg38
Updated: 2019-03-31
Owner: ChiTaRS
NM_001164380.1		1..574
100.0%		-
8		 LOC100130134 110..582
95.8%		-
X		2
63
282		exon-exon
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI536049 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: LOC100130134 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678-737383047374681731protein-coding100130134X-900405999004092821pseudo 440 hg38
Updated: 2019-04-14
Owner: ChiTaRS
NM_001164380.1		38..230
99.5%		-
8		 LOC100130134 83..276
96.1%		-
X		2
63
282		exon-exon
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CB048342 FASTA
Head Gene (1) Alignment: STAU2 | OMIM: 605920 Tail Gene (2) Alignment: MELK | OMIM: 607025 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
270678-736536637367321311protein-coding98339-366163883661640900protein-coding 375 hg38
Updated: 2019-04-13
Owner: ChiTaRS
NM_001164380.1		9..348
100.0%		-
8
XM_011518077.1		347..368
100.0%		-
9		1
0
0		exon-intron

T O P