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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SRP14'

Total of fusion sequences: 14 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ015130 FASTA
Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: C1orf198 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
672715+400360414003734931protein-coding848861+23083768723083783261protein-coding 690 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
SRP14 (PF02290, IPR003210) 95 4 94 8.1e-29 86.200 Signal recognition particle 14kD protein
IHABP4_N (PF16174, IPR032381) 170 88 154 0.00024 7.900 Intracellular hyaluronan-binding protein 4 N-terminal
Updated: 2019-02-21
Owner: ChiTaRS
NM_001309434.1		18..551
99.7%		+
15
NM_001136494.1		545..690
98.7%		+
1		1
0
0		exon-exon
2
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: CN337981 FASTA
Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: EME2 | OMIM: 610886 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
672715-400383644003912261protein-coding19734216+1774945177587850protein-coding 615 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
ERCC4 (PF02732, IPR006166, SM00891) 157 87 167 2.3e-08 20.500 ERCC4 domain
Updated: 2019-02-21
Owner: ChiTaRS
NM_001309434.1		2..135
100.0%		-
15
XM_017023025.1		136..615
100.0%		+
16		1
0
0		exon-intron
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC071716 FASTA
UniProtKB: P37108 Signal recognition particle 14 kDa protein (SRP14) (18 kDa Alu RNA-binding protein)
Fusion Gene(s): SRP14
Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: DOCK8 | OMIM: 611432 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
672715-400360414003913862protein-coding817049+38959439003200protein-coding 739 hg38
Updated: 2019-04-13
Owner: ChiTaRS
NM_001309434.1		1..725
99.6%		-
15
XM_017015174.1		343..737
97.8%		+
9		1
0
0		exon-intron
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA844150 FASTA
Head Gene (1) Alignment: SMCO4 | OMIM: 609477 Tail Gene (2) Alignment: SRP14 | OMIM: 600708 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
5693511-935357909353612511protein-coding672715+400360384003639611protein-coding 368 hg38
Updated: 2019-04-18
Owner: ChiTaRS
XM_011542910.3		2..339
96.5%		-
11
NM_001309434.1		11..368
99.5%		+
15		2
23
12		exon-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA541408 FASTA
Head Gene (1) Alignment: SMCO4 | OMIM: 609477 Tail Gene (2) Alignment: SRP14 | OMIM: 600708 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
5693511-935358029353612211protein-coding672715+400360414003637311protein-coding 353 hg38
Updated: 2019-04-14
Owner: ChiTaRS
XM_011542910.3		1..323
96.0%		-
11
NM_001309434.1		9..346
96.1%		+
15		2
23
12		exon-exon
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA706314 FASTA
Head Gene (1) Alignment: DOCK8 | OMIM: 611432 Tail Gene (2) Alignment: SRP14 | OMIM: 600708 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
817049-38959439003200protein-coding672715+400360414003895151protein-coding 722 hg38
Updated: 2019-04-18
Owner: ChiTaRS
NM_203447.3		4..398
97.8%		-
9
NM_001309434.1		16..696
99.6%		+
15		1
0
0		intron-exon
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: FN165361 FASTA
Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: PIP5KL1 | OMIM: 612865 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
672715+400364664003700821protein-coding1384299-12793178912793180811protein-coding 90 hg38
Updated: 2019-02-26
Owner: ChiTaRS
NM_001309434.1		6..68
96.1%		+
15		 PIP5KL1
Q5T9C9
XM_017014279.1		59..78
100.0%		-
9		1
0
0		exon-exon
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF342280 FASTA
Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: VPS13B | OMIM: 607817 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
672715-400360464003914462protein-coding1576808-9947844399515395390protein-coding 754 hg38
Updated: 2019-01-02
Owner: ChiTaRS
NM_001309434.1		1..722
98.2%		-
15
XM_017013112.1		348..750
98.2%		-
8		1
0
0		exon-intron
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE836999 FASTA
Head Gene (1) Alignment: NUMB | OMIM: 603728 Tail Gene (2) Alignment: SRP14 | OMIM: 600708 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
865014+732872537329286661tumor suppressor672715+400389274003917321protein-coding 331 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
PID (PF00640, IPR006020, SM00462) 140 39 171 2.3e-39 120.900 Phosphotyrosine interaction domain (PTB/PID)
Updated: 2019-02-20
Owner: ChiTaRS
NM_001005743.1		35..229
100.0%		+
14
NM_001309434.1		218..320
99.1%		+
15		1
0
0		exon-exon
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA984265 FASTA
Head Gene (1) Alignment: SRP14 | OMIM: 600708 Tail Gene (2) Alignment: ABCB11 | OMIM: 603201 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
672715+400388844003916861protein-coding86472-16901260916901292550protein-coding 458 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_001309434.1		1..141
95.2%		+
15
XM_011512078.2		142..458
99.4%		-
2		1
0
0		exon-intron

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