Result for the search of Gene Name/NCBI ID(s): 'SREK1'

Total of fusion sequences: 13 (from 12,143,238 parsed EST/mRNAs. Last update: 2021-04-05 16:54:11)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs BE177332 ANNOTATION OF CHIMERA FUSION GenBank ID: BE177332 FASTA Head Gene (1) Alignment: CTNNB1 | OMIM: 116806 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1499 3 + 41239667 41239935 17 1 oncogene, protein-coding 140890 5 + 66156236 66156529 12 0 protein-coding 593 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Arm (PF00514, IPR000225, SM00185) 41 317 356 1.3e-09 24.200 Armadillo/beta-catenin-like repeat DUF3361 (PF11841, IPR024574) 154 687 781 0.0004 6.500 Domain of unknown function (DUF3361) Updated: 2019-02-20 Owner: ChiTaRS	CTNNB1 A0A024R2Q3 A0A2R8Y543 A0A2R8Y5A3 A0A2R8Y5C3 A0A2R8Y5Z1 A0A2R8Y6G0 A0A2R8Y750 A0A2R8Y7Z0 A0A2R8Y804 A0A2R8Y815 A0A2R8YCH5 A0A2R8YG06 B4DGU4 B5BU28 C9IZ65 C9JV16 E7EMJ5 E7EV28 E9PDF9 G9GAG7 P35222 NM_001330729.1	35..300 98.9%	+ 3	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 XM_011543171.3	292..585 97.0%	+ 5	1 0 0	exon-intron
2 Homo Sapiens	SplGraphs BU600561 ANNOTATION OF CHIMERA FUSION GenBank ID: BU600561 FASTA Head Gene (1) Alignment: IWS1 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55677 2 - 127503470 127503523 12 1 protein-coding 140890 5 + 66170738 66177548 4 1 protein-coding 594 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Use1 (PF09753, IPR019150) 250 36 151 0.0072 2.100 Membrane fusion protein Use1 SARA (PF11409, IPR024608) 37 187 206 0.013 2.100 Smad anchor for receptor activation (SARA) EF-1_beta_acid (PF10587, IPR018940) 28 312 327 0.035 0.900 Eukaryotic elongation factor 1 beta central acidic region Trypan_PARP (PF05887, IPR008882) 143 411 503 0.02 1.100 Procyclic acidic repetitive protein (PARP) Ureide_permease (PF07168, IPR009834) 359 566 637 0.0057 1.500 Ureide permease Updated: 2019-02-21 Owner: ChiTaRS	IWS1 A0A1B0GW95 B8ZZB6 H7C0U1 Q7L2V5 Q96ST2 XM_006712626.3	1..54 98.2%	- 2	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	51..391 100.0%	+ 5	1 0 0	exon-exon
3 Homo Sapiens	AI961243 ANNOTATION OF CHIMERA FUSION GenBank ID: AI961243 FASTA Head Gene (1) Alignment: SREK1 | OMIM: 609268 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 140890 5 - 65466453 65466696 NA NA protein-coding 140890 5 - 65466736 65473432 NA NA protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RRM_1 (PF00076, IPR000504, SM00361) 70 21 92 1.4e-10 27.200 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TFIIA (PF03153, IPR004855) 415 211 469 4.4e-05 9.700 Transcription factor IIA, alpha/beta subunit CSG2 (PF16965, IPR031581) 397 388 498 0.0026 2.700 Ceramide synthase regulator DUF4192 (PF13830, IPR025447) 319 572 718 0.0021 4.100 Domain of unknown function (DUF4192) DUF1777 (PF08648, IPR013957) 171 623 759 0.0015 5.000 Protein of unknown function (DUF1777) Updated: 2012-12-12 Owner: ChiTaRS	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9	1..245 98.4%	- 5	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9	238..464 100.0%	- 5	0 65535 65535	exon-exon
4 Homo Sapiens	BF790813 ANNOTATION OF CHIMERA FUSION GenBank ID: BF790813 FASTA Head Gene (1) Alignment: SREK1 | OMIM: 609268 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 140890 5 + 66179026 66179337 13 1 protein-coding 140890 5 + 66158809 66159334 11 1 protein-coding 1547 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TraV (PF09676, IPR014118) 132 857 871 0.023 1.900 Type IV conjugative transfer system lipoprotein (TraV) DUF2072 (PF09845, IPR018645) 133 2336 2446 0.051 0.100 Zn-ribbon containing protein RRM_1 (PF00076, IPR000504, SM00361) 70 2728 2796 1.9e-16 46.000 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RP-C_C (PF11800, IPR021760) 206 2808 2904 0.042 0.000 Replication protein C C-terminal region Updated: 2019-02-20 Owner: ChiTaRS	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	1..312 99.4%	+ 5	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	313..545 99.2%	+ 5	0 19848 188	exon-exon
5 Homo Sapiens	EC563194 ANNOTATION OF CHIMERA FUSION GenBank ID: EC563194 FASTA Head Gene (1) Alignment: SREK1 | OMIM: 609268 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 140890 5 + 66174969 66175040 1 1 protein-coding 140890 5 + 66170741 66170785 1 1 protein-coding 111 hg38 Updated: 2019-03-25 Owner: ChiTaRS	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001323534.1	1..69 98.6%	+ 5	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001323534.1	69..111 100.0%	+ 5	0 6797 4209	exon-exon
6 Homo Sapiens	AW087368 ANNOTATION OF CHIMERA FUSION GenBank ID: AW087368 FASTA Head Gene (1) Alignment: SREK1 | OMIM: 609268 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 140890 5 - 66170760 66174993 11 1 protein-coding 140890 5 - 66170917 66177582 4 1 protein-coding 418 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RRM_1 (PF00076, IPR000504, SM00361) 70 21 92 1.5e-10 27.100 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) TFIIA (PF03153, IPR004855) 415 211 508 4.9e-05 9.500 Transcription factor IIA, alpha/beta subunit Mem_trans (PF03547, IPR004776) 387 425 608 8.5e-07 13.700 Membrane transport protein SID-1_RNA_chan (PF13965, IPR025958) 607 552 788 1.1e-05 10.100 dsRNA-gated channel SID-1 DUF1777 (PF08648, IPR013957) 171 644 784 0.0019 4.600 Protein of unknown function (DUF1777) Updated: 2019-02-23 Owner: ChiTaRS	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	1..236 100.0%	- 5	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	223..418 99.5%	- 5	0 1600 8454	exon-exon
7 Homo Sapiens	CD240226 ANNOTATION OF CHIMERA FUSION GenBank ID: CD240226 FASTA Head Gene (1) Alignment: SREK1 | OMIM: 609268 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 140890 5 + 66180063 66180110 1 1 protein-coding 140890 5 - 66179970 66180059 1 1 protein-coding 256 hg38 Updated: 2019-03-31 Owner: ChiTaRS	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001323534.1	45..92 100.0%	+ 5	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001323534.1	88..177 100.0%	- 5	2 877 849	exon-exon
8 Homo Sapiens	CA312708 ANNOTATION OF CHIMERA FUSION GenBank ID: CA312708 FASTA Head Gene (1) Alignment: SREK1 | OMIM: 609268 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 140890 5 - 66179214 66179341 13 1 protein-coding 140890 5 + 66178893 66179182 1 1 protein-coding 436 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Transformer (PF06495, IPR010519) 182 397 441 0.015 1.500 Fruit fly transformer protein Updated: 2019-02-21 Owner: ChiTaRS	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	17..144 100.0%	- 5	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	138..427 100.0%	+ 5	2 877 849	exon-exon
9 Homo Sapiens	BG153737 ANNOTATION OF CHIMERA FUSION GenBank ID: BG153737 FASTA Head Gene (1) Alignment: UHRF1 | OMIM: 607990 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29128 19 + 4917110 4917137 0 0 protein-coding 140890 5 - 66170784 66170891 1 1 protein-coding 181 hg38 Updated: 2019-11-28 Owner: ChiTaRS	UHRF1 A0A087WTW0 A0A087WVR3 A0A087WWG9 L8ECE3 Q96T88 NM_001290050.1	30..57 100.0%	+ 19	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001323534.1	42..141 100.0%	- 5	1 0 0	intron-exon
10 Homo Sapiens	BE172450 ANNOTATION OF CHIMERA FUSION GenBank ID: BE172450 FASTA Head Gene (1) Alignment: NFIB | OMIM: 600728 Tail Gene (2) Alignment: SREK1 | OMIM: 609268 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4781 9 + 14295992 14296127 11 0 oncogene, protein-coding 140890 5 + 66180025 66180089 1 1 protein-coding 211 hg38 Updated: 2019-02-20 Owner: ChiTaRS	NFIB A0A087WXP2 A0A0A0MRX8 A0A0S2Z4H3 A0A1B0GTC1 A0A1B0GU97 A0A1B0GVN4 A0A1B0GW37 A0A1B0GWB8 A0A1B0GWI9 A0A1B0GWJ4 A0A2R8Y7V8 O00712 Q5VW26 Q5VW27 Q5VW28 Q5VW30 Q5VW31 Q5W0Y9 U3KPY9 U3KQE8 NM_001282787.1	13..148 100.0%	+ 9	SREK1 A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9 NM_001270492.1	147..211 100.0%	+ 5	1 0 0	intron-exon

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