Result for the search of Gene Name/NCBI ID(s): 'SNX12'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs BP274873 ANNOTATION OF CHIMERA FUSION GenBank ID: BP274873 FASTA Head Gene (1) Alignment: SNX12 | OMIM: 300883 Tail Gene (2) Alignment: RMND5B Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29934 X - 71062880 71068334 4 1 protein-coding 64777 5 + 178138174 178138479 9 1 oncogene, protein-coding 565 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Sec15 (PF04091, IPR007225) 313 188 305 1.1e-05 11.100 Exocyst complex subunit Sec15-like CLTH (PF10607, IPR024964) 147 297 441 6.3e-36 109.700 CTLH/CRA C-terminal to LisH motif domain zf-RING_UBOX (PF13445, IPR027370) 38 480 519 6.7e-09 22.000 RING-type zinc-finger Updated: 2019-02-21 Owner: ChiTaRS	SNX12 A0A087X0R6 Q3SYF1 Q9UMY4 NM_013346.3	1..263 100.0%	- X	RMND5B D6R9A2 D6RER3 D6RFE6 D6RFK1 D6RIF9 F5H6G4 Q96G75 NM_001288794.1	260..565 98.7%	+ 5	1 0 0	exon-exon
2 Homo Sapiens	SplGraphs DA812017 ANNOTATION OF CHIMERA FUSION GenBank ID: DA812017 FASTA Head Gene (1) Alignment: SNX12 | OMIM: 300883 Tail Gene (2) Alignment: MMP2 | OMIM: 120360 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29934 X - 71059747 71060118 1 1 protein-coding 4313 16 + 55491860 55497032 6 1 oncogene, protein-coding 712 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to PX (PF00787, IPR001683, SM00312) 113 82 204 9.9e-30 89.100 PX domain Hemopexin (PF00045, IPR018487, SM00120) 45 750 789 4.8e-11 28.800 Hemopexin Updated: 2019-02-21 Owner: ChiTaRS	SNX12 A0A087X0R6 Q3SYF1 Q9UMY4 NM_001256185.1	1..372 100.0%	- X	MMP2 A0A024R6R4 H3BR66 H3BS34 H3BV48 J3KRB7 P08253 NM_001302509.1	366..706 99.5%	+ 16	1 0 0	exon-exon
3 Homo Sapiens	AW135776 ANNOTATION OF CHIMERA FUSION GenBank ID: AW135776 FASTA Head Gene (1) Alignment: GRM8 | OMIM: 601116 Tail Gene (2) Alignment: SNX12 | OMIM: 300883 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2918 7 - 127051737 127051756 0 0 protein-coding 29934 X + 71059247 71059622 1 1 protein-coding 391 hg38 Updated: 2019-04-13 Owner: ChiTaRS	GRM8 A0A0A0MT06 C9J7I1 E7ETK3 H7C4V5 O00222 XM_017012075.1	1..20 100.0%	- 7	SNX12 A0A087X0R6 Q3SYF1 Q9UMY4 NM_001256185.1	16..391 97.1%	+ X	1 0 0	intron-exon
4 Homo Sapiens	CB048891 ANNOTATION OF CHIMERA FUSION GenBank ID: CB048891 FASTA Head Gene (1) Alignment: SNX12 | OMIM: 300883 Tail Gene (2) Alignment: FBXW8 | OMIM: 609073 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29934 X - 71059247 71059593 1 1 protein-coding 26259 12 + 116979776 116979801 0 0 protein-coding 378 hg38 Updated: 2019-04-13 Owner: ChiTaRS	SNX12 A0A087X0R6 Q3SYF1 Q9UMY4 NM_001256185.1	10..356 100.0%	- X	FBXW8 A0A024RBM5 A0A499FIY5 Q8N3Y1 XR_001748653.1	353..378 100.0%	+ 12	1 0 0	exon-intron
5 Homo Sapiens	CB048890 ANNOTATION OF CHIMERA FUSION GenBank ID: CB048890 FASTA Head Gene (1) Alignment: LOC100506551 Tail Gene (2) Alignment: SNX12 | OMIM: 300883 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 100506551 12 - 116979776 116979801 0 0 ncRNA 29934 X + 71059247 71059501 1 1 protein-coding 277 hg38 Updated: 2019-04-13 Owner: ChiTaRS	LOC100506551 NR_103809.1	1..26 100.0%	- 12	SNX12 A0A087X0R6 Q3SYF1 Q9UMY4 NM_001256185.1	23..277 97.3%	+ X	1 0 0	intron-exon

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