Result for the search of Gene Name/NCBI ID(s): 'SMO'

Total of fusion sequences: 6 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	BE250601 ANNOTATION OF CHIMERA FUSION GenBank ID: BE250601 FASTA Head Gene (1) Alignment: SMO | OMIM: 601500 Tail Gene (2) Alignment: SMO | OMIM: 601500 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6608 7 + 129205757 129206566 6 1 oncogene, protein-coding 6608 7 - 129208778 129208821 6 1 oncogene, protein-coding 640 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Fz (PF01392, IPR020067, SM00063) 111 70 179 7.1e-18 51.600 Fz domain Frizzled (PF01534, IPR000539) 324 221 584 1.4e-88 283.100 Frizzled/Smoothened family membrane region Updated: 2019-02-20 Owner: ChiTaRS	SMO H7C509 H7C5S9 Q99835 NM_005631.4	1..443 99.5%	+ 7	SMO H7C509 H7C5S9 Q99835 NM_005631.4	441..484 100.0%	- 7	1 0 0	exon-exon
2 Homo Sapiens	BE297232 ANNOTATION OF CHIMERA FUSION GenBank ID: BE297232 FASTA Head Gene (1) Alignment: SMO | OMIM: 601500 Tail Gene (2) Alignment: SMO | OMIM: 601500 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6608 7 + 129205757 129206566 6 1 oncogene, protein-coding 6608 7 - 129208778 129208821 6 1 oncogene, protein-coding 563 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Fz (PF01392, IPR020067, SM00063) 111 70 179 7.1e-18 51.600 Fz domain Frizzled (PF01534, IPR000539) 324 221 584 1.4e-88 283.100 Frizzled/Smoothened family membrane region Updated: 2019-02-20 Owner: ChiTaRS	SMO H7C509 H7C5S9 Q99835 NM_005631.4	1..443 99.5%	+ 7	SMO H7C509 H7C5S9 Q99835 NM_005631.4	441..484 100.0%	- 7	1 0 0	exon-exon
3 Homo Sapiens	BF929178 ANNOTATION OF CHIMERA FUSION GenBank ID: BF929178 FASTA Head Gene (1) Alignment: SMO | OMIM: 601500 Tail Gene (2) Alignment: NPAS3 | OMIM: 609430 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6608 7 - 129211033 129211673 11 1 oncogene, protein-coding 64067 14 - 33692386 33692710 6 0 protein-coding 434 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Fz (PF01392, IPR020067, SM00063) 111 70 179 9.1e-18 51.300 Fz domain Frizzled (PF01534, IPR000539) 324 221 552 2.5e-97 311.900 Frizzled/Smoothened family membrane region Updated: 2019-02-20 Owner: ChiTaRS	SMO H7C509 H7C5S9 Q99835 NM_005631.4	1..119 100.0%	- 7	NPAS3 F8VR32 F8VS42 F8W0C2 H0YHB6 H0YHU7 H0YI42 Q8IXF0 X5D2Q4 X5D7M0 X5D985 X5D988 X5D9I7 X5DNV7 X5DR67 X5DRF3 X5DRK2 XM_017021583.1	114..434 99.4%	- 14	1 0 0	exon-intron
4 Homo Sapiens	BF876881 ANNOTATION OF CHIMERA FUSION GenBank ID: BF876881 FASTA Head Gene (1) Alignment: SMO | OMIM: 601500 Tail Gene (2) Alignment: CAMK1D | OMIM: 607957 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6608 7 + 129210978 129211066 10 1 oncogene, protein-coding 57118 10 - 12480087 12480174 10 0 protein-coding 169 hg38 Updated: 2019-02-20 Owner: ChiTaRS	SMO H7C509 H7C5S9 Q99835 NM_005631.4	1..89 98.9%	+ 7	CAMK1D A0A087WUR6 Q5SQQ7 Q8IU85 XM_024448087.1	82..169 98.9%	- 10	1 0 0	exon-intron
5 Homo Sapiens	AW022584 ANNOTATION OF CHIMERA FUSION GenBank ID: AW022584 FASTA Head Gene (1) Alignment: SMO | OMIM: 601500 Tail Gene (2) Alignment: LOC107984701 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6608 7 + 129213321 129213545 12 1 oncogene, protein-coding 107984701 14 + 49536554 49536612 1 0 ncRNA 298 hg38 Updated: 2019-02-07 Owner: ChiTaRS	SMO H7C509 H7C5S9 Q99835 NM_005631.4	8..232 100.0%	+ 7	LOC107984701 XR_001750760.2	212..270 98.3%	+ 14	1 0 0	exon-intron
6 Homo Sapiens	BC004142 ANNOTATION OF CHIMERA FUSION GenBank ID: BC004142 FASTA Head Gene (1) Alignment: SMO | OMIM: 601500 Tail Gene (2) Alignment: CHCHD3 | OMIM: 613748 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6608 7 - 129208778 129208821 7 1 oncogene, protein-coding 54927 7 - 133034509 133035928 2 0 protein-coding 1953 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Fz (PF01392, IPR020067, SM00063) 111 70 179 1.2e-17 50.900 Fz domain Frizzled (PF01534, IPR000539) 324 221 441 2.7e-69 219.800 Frizzled/Smoothened family membrane region GST_N (PF02798, IPR004045) 76 461 540 1.7e-26 78.700 Glutathione S-transferase, N-terminal domain GST_C (PF00043, IPR004046) 93 565 657 1.2e-22 66.300 Glutathione S-transferase, C-terminal domain EF1G (PF00647, IPR001662) 107 734 840 1.3e-56 175.500 Elongation factor 1 gamma, conserved domain Updated: 2019-02-20 Owner: ChiTaRS	SMO H7C509 H7C5S9 Q99835 NM_005631.4	468..511 100.0%	- 7	CHCHD3 A0A286YEX5 A4D1N4 C9JRZ6 F8WAR4 Q9NX63 NR_133671.1	511..1930 99.3%	- 7	1 0 0	exon-intron

T O P