Result for the search of Gene Name/NCBI ID(s): 'SMC2'

Total of fusion sequences: 4 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	AA769582 ANNOTATION OF CHIMERA FUSION GenBank ID: AA769582 FASTA Head Gene (1) Alignment: SMC2 | OMIM: 605576 Tail Gene (2) Alignment: SMC2 | OMIM: 605576 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10592 9 - 106864347 106864784 NA NA protein-coding 10592 9 - 106873891 106875634 NA NA protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Spc7 (PF08317, IPR013253, SM00787) 310 459 617 1.1e-07 17.100 Spc7 kinetochore protein SMC_hinge (PF06470, IPR010935, SM00968) 117 629 750 3.7e-27 81.200 SMC proteins Flexible Hinge Domain DUF4201 (PF13870, IPR025254) 177 784 878 5.4e-05 9.100 Domain of unknown function (DUF4201) SMC_N (PF02463, IPR003395) 220 831 1277 8.2e-29 86.700 RecF/RecN/SMC N terminal domain DUF4200 (PF13863, IPR025252) 119 848 962 7.9e-07 15.800 Domain of unknown function (DUF4200) Updated: 2012-12-12 Owner: ChiTaRS	SMC2 A0A024R158 A0A0C4DGE5 A0JLM9 B7ZLZ7 O95347 Q05BV1 Q05D74 Q32Q15 Q5T821 Q6IPS5 Q6P712 Q7Z2X1	1..208 100.0%	- 9	SMC2 A0A024R158 A0A0C4DGE5 A0JLM9 B7ZLZ7 O95347 Q05BV1 Q05D74 Q32Q15 Q5T821 Q6IPS5 Q6P712 Q7Z2X1	190..433 98.8%	- 9	2 71 4	exon-exon
2 Homo Sapiens	AW510653 ANNOTATION OF CHIMERA FUSION GenBank ID: AW510653 FASTA Head Gene (1) Alignment: SMC2 | OMIM: 605576 Tail Gene (2) Alignment: SMC2 | OMIM: 605576 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10592 9 - 106864347 106864855 NA NA protein-coding 10592 9 - 106873895 106875634 NA NA protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Spc7 (PF08317, IPR013253, SM00787) 310 507 662 1.2e-07 17.000 Spc7 kinetochore protein SMC_hinge (PF06470, IPR010935, SM00968) 117 674 795 3.9e-27 81.200 SMC proteins Flexible Hinge Domain DUF4201 (PF13870, IPR025254) 177 829 923 5.9e-05 8.900 Domain of unknown function (DUF4201) SMC_N (PF02463, IPR003395) 220 876 1322 6.3e-29 87.100 RecF/RecN/SMC N terminal domain DUF4200 (PF13863, IPR025252) 119 893 1007 8.4e-07 15.700 Domain of unknown function (DUF4200) Updated: 2012-12-12 Owner: ChiTaRS	SMC2 A0A024R158 A0A0C4DGE5 A0JLM9 B7ZLZ7 O95347 Q05BV1 Q05D74 Q32Q15 Q5T821 Q6IPS5 Q6P712 Q7Z2X1	21..299 100.0%	- 9	SMC2 A0A024R158 A0A0C4DGE5 A0JLM9 B7ZLZ7 O95347 Q05BV1 Q05D74 Q32Q15 Q5T821 Q6IPS5 Q6P712 Q7Z2X1	281..521 99.2%	- 9	2 71 4	exon-exon
3 Homo Sapiens	BF908969 ANNOTATION OF CHIMERA FUSION GenBank ID: BF908969 FASTA Head Gene (1) Alignment: KIF3B | OMIM: 603754 Tail Gene (2) Alignment: SMC2 | OMIM: 605576 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9371 20 - 32311082 32311181 2 1 protein-coding 10592 9 - 104127318 104127376 6 1 protein-coding 158 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Kinesin (PF00225, IPR001752, SM00129) 333 15 340 2e-126 407.500 Kinesin motor domain Kinesin_assoc (PF16183, IPR032405) 181 345 458 3e-06 13.700 Kinesin-associated Updated: 2019-02-20 Owner: ChiTaRS	KIF3B O15066 NM_004798.3	2..99 96.0%	- 20	SMC2 A0A024R158 A0A0C4DGE5 A0JLM9 B7ZLZ7 O95347 Q05BV1 Q05D74 Q32Q15 Q5T821 Q6IPS5 Q6P712 Q7Z2X1 XM_017014206.1	92..150 98.4%	- 9	1 0 0	exon-exon
4 Homo Sapiens	BE046964 ANNOTATION OF CHIMERA FUSION GenBank ID: BE046964 FASTA Head Gene (1) Alignment: MRAP | OMIM: 609196 Tail Gene (2) Alignment: SMC2 | OMIM: 605576 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 56246 21 + 32313963 32314216 5 0 protein-coding 10592 9 - 104118216 104123171 11 1 protein-coding 612 hg38 Updated: 2019-02-20 Owner: ChiTaRS	MRAP Q8TCY5 NM_178817.3	3..256 100.0%	+ 21	SMC2 A0A024R158 A0A0C4DGE5 A0JLM9 B7ZLZ7 O95347 Q05BV1 Q05D74 Q32Q15 Q5T821 Q6IPS5 Q6P712 Q7Z2X1 XM_017014206.1	253..612 99.5%	- 9	1 0 0	intron-exon

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