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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SMARCA4'

Total of fusion sequences: 16 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs
NM_001281719.1
1..353
100.0%
+
17

XM_011528198.1
348..582
100.0%
+
19
1
0
0
exon-exon
2
Homo Sapiens
SplGraphs
XM_011528198.1
20..365
99.5%
+
19

NM_001099285.1
349..507
100.0%
+
2
1
0
0
exon-exon
3
Homo Sapiens
C19orf38
A8MVS5

XM_005259846.5
7..26
98.6%
+
19

XM_024451658.1
27..74
98.6%
+
19
1
0
0
intron-intronBREAKPOINTs
25500544
4
Homo Sapiens

XM_011528198.1
1..77
98.8%
+
19

XM_011528198.1
76..637
97.9%
+
19
0
14119
15536
exon-exon
5
Homo Sapiens

XM_011528198.1
39..130
99.0%
-
19

XM_011528198.1
122..419
99.4%
+
19
0
14119
15536
exon-exon
6
Homo Sapiens

XM_011528198.1
1..59
98.4%
-
19

XM_011528198.1
57..543
98.2%
+
19
0
57
7974
intron-exon
7
Homo Sapiens

XM_011528198.1
12..102
100.0%
+
19

XM_011528198.1
99..174
100.0%
-
19
0
57
7974
exon-exon
8
Homo Sapiens

XM_024451818.1
75..283
100.0%
+
20

XM_011528198.1
159..297
97.2%
-
19
1
0
0
exon-intron
9
Homo Sapiens

XM_011528198.1
1..182
100.0%
-
19

NM_001013836.1
182..424
99.6%
+
7
1
0
0
exon-intron
10
Homo Sapiens
3..122
95.0%
+
8
6..135
96.2%
-
19
1
0
0
intron-intron

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