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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'SMARCA1'

Total of fusion sequences: 12 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo SapiensSplGraphs
NM_003069.4
1..114
99.2%
-
X

NM_001330216.1
107..355
99.6%
+
17
1
0
0
exon-exon
Mus musculus
XM_017319792.1
502..751
98.1%
+
1

NM_001290708.1
736..821
95.5%
-
X
1
0
0
intron-intron
Mus musculus Spink1
P09036

NM_009258.5
20..385
99.8%
-
18

NM_001290708.1
383..426
97.8%
+
X
1
0
0
exon-intron
Mus musculus 4..393
100.0%
+
MT

NM_001290708.1
393..444
96.2%
+
X
1
0
0
intron-intron
Homo Sapiens
XR_001738608.1
24..46
100.0%
+
2

NM_001282874.1
39..522
98.4%
+
X
1
0
0
intron-exon
Homo Sapiens
NM_003069.4
1..78
100.0%
-
X

NM_003069.4
75..136
98.4%
+
X
1
0
0
exon-exon
Mus musculus
NM_001290708.1
1..146
100.0%
-
X

NM_001290708.1
145..603
100.0%
-
X
1
0
0
exon-exon
Mus musculus
NM_011321.3
19..391
99.0%
+
17

NM_001290708.1
390..432
97.7%
+
X
2
5
35
exon-intron
Mus musculus
NM_011321.3
19..294
99.7%
+
17

NM_001290708.1
295..360
97.0%
+
X
2
5
35
intron-intron
Homo Sapiens
NM_001111298.2
13..38
100.0%
-
6

NM_003069.4
29..683
99.6%
+
X
1
0
0
intron-exon

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