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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SKP1'

Total of fusion sequences: 33 (from 1528141 parsed EST/mRNAs. Last update 2020-01-13 13:10:48)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs
NM_170679.2
2..257
100.0%
-
5

NM_001540.4
257..365
100.0%
+
7
1
0
0
exon-exon
2
Mus musculus
SplGraphs
XM_006532786.2
1..65
100.0%
+
11

XM_006532786.2
57..510
99.4%
+
11
1
0
0
intron-intron
3
Mus musculus
H3f3b
P84244

XM_006532248.2
1..172
96.6%
+
11

XM_006532786.2
160..221
98.4%
+
11
1
0
0
exon-exon
4
Homo Sapiens

NM_170679.2
1..552
99.3%
+
5

XR_001747813.1
552..573
100.0%
-
11
2
0
355
intron-intron
5
Homo Sapiens

XR_001747804.1
1..351
99.8%
+
11

NM_170679.2
351..546
100.0%
-
5
2
0
355
intron-intron
6
Homo Sapiens

XM_017011004.2
2..23
95.5%
-
6

NM_170679.2
6..82
96.1%
+
5
1
0
0
intron-exon
7
Homo Sapiens

XM_017011004.2
2..23
95.5%
-
6

NM_170679.2
6..82
96.1%
+
5
1
0
0
intron-exon
8
Homo Sapiens
LINC00174
ENST00000640964
1..8
95.2%
-
7

NM_170679.2
5..559
99.9%
-
5
1
0
0
intron-exon
9
Mus musculus

XM_006532786.2
16..280
100.0%
+
11

NM_023821.3
280..304
100.0%
-
13
1
0
0
exon-intron
10
Homo Sapiens

XM_011532055.3
8..191
97.9%
+
4

NM_170679.2
185..343
98.2%
-
5
1
0
0
intron-intron

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