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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SKA2'

Total of fusion sequences: 10 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
ChimerDB
NM_001330399.1
12..92
100.0%
-
17

NM_001997.4
84..235
100.0%
-
11
1
0
0
exon-exon
2
Homo Sapiens
ChimerDB
NM_001330399.1
8..55
100.0%
-
17

XM_017027816.1
52..603
99.5%
+
20
1
0
0
exon-exon
3
Homo Sapiens

NM_182620.3
1..133
100.0%
-
17

XR_001752648.2
132..209
100.0%
-
17
1
0
0
exon-exon1RNA-seq
BREAKPOINTs
21247443
4
Homo Sapiens

NM_182620.3
5..32
96.3%
-
17
MTATP6P1 30..123
100.0%
+
1
1
0
0
intron-intron
5
Homo Sapiens

NM_182620.3
10..40
96.2%
-
17

NM_006366.2
25..243
95.8%
-
6
1
0
0
intron-intron
6
Homo Sapiens
6..50
95.6%
+
17
8..315
100.0%
-
10
1
0
0
intron-intron
7
Homo Sapiens

NM_182620.3
38..213
100.0%
-
17
SPRY4-AS1
NR_120664.1
211..333
96.3%
+
5
1
0
0
exon-intron
8
Homo Sapiens

NM_001330399.1
1..27
100.0%
+
17
CYP2U1-AS1
NR_125929.1
16..672
100.0%
-
4
1
0
0
intron-intron
9
Homo Sapiens

NM_001330399.1
1..26
100.0%
+
17

XM_011516947.3
3..381
98.7%
-
8
1
0
0
intron-intron
10
Homo Sapiens
4..53
100.0%
-
17
41..81
96.5%
+
11
1
0
0
intron-intron

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