Result for the search of Gene Name/NCBI ID(s): 'SIPA1L3'

Total of fusion sequences: 15 (from 3,568,812 parsed EST/mRNAs. Last update: 2020-07-14 10:36:55)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB BF772180 ANNOTATION OF CHIMERA FUSION GenBank ID: BF772180 FASTA Head Gene (1) Alignment: MST1R | OMIM: 600168 Tail Gene (2) Alignment: SIPA1L3 | OMIM: 616655 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4486 3 - 49887307 49887414 1 1 oncogene, tumor suppressor, protein-coding 23094 19 + 38164581 38164682 8 1 protein-coding 202 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Sema (PF01403, IPR001627, SM00630) 428 60 504 1.3e-48 151.800 Sema domain PSI (PF01437, IPR002165, SM00423) 51 526 568 5.2e-08 19.700 Plexin repeat TIG (PF01833, IPR002909) 85 569 674 1.4e-08 21.000 IPT/TIG domain Pkinase_Tyr (PF07714, IPR001245) 260 1082 1341 6.8e-93 296.800 Protein tyrosine kinase Updated: 2019-02-20 Owner: ChiTaRS	MST1R A0A087WZQ8 H2E272 H7C074 H7C3Z8 J3KQS7 K9JYP4 Q04912 NM_002447.3	2..102 98.0%	- 3	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 NM_015073.2	101..202 100.0%	+ 19	1 0 0	exon-exon
2 Homo Sapiens	EC485901 ANNOTATION OF CHIMERA FUSION GenBank ID: EC485901 FASTA Head Gene (1) Alignment: SIPA1L3 | OMIM: 616655 Tail Gene (2) Alignment: LSM14A | OMIM: 610677 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23094 19 + 38132114 38132555 0 0 protein-coding 26065 19 + 34198544 34198613 0 0 protein-coding 79 hg38 Updated: 2019-04-10 Owner: ChiTaRS	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_011526657.2	1..49 100.0%	+ 19	LSM14A A0A096LP11 A0A0G2JQ95 A0A140TA66 A0A140TA76 I3L4Q1 K7EMZ9 Q8ND56 NM_001114093.1	6..75 98.6%	+ 19	1 0 0	intron-intron		BREAKPOINTs 22975805 25500544
3 Homo Sapiens	AA654988 ANNOTATION OF CHIMERA FUSION GenBank ID: AA654988 FASTA Head Gene (1) Alignment: SIPA1L3 | OMIM: 616655 Tail Gene (2) Alignment: SIPA1L3 | OMIM: 616655 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23094 19 + 37951367 37951448 1 0 protein-coding 23094 19 - 37951144 37951377 22 0 protein-coding 317 hg38 Updated: 2019-02-20 Owner: ChiTaRS	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 NM_015073.2	8..89 100.0%	+ 19	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_005258671.4	84..317 100.0%	- 19	1 0 0	intron-intron	2HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - AA654988 SIPA1L3 19 37951443 37951448 37959360 7912 SIPA1L3 19 37951144 37951149 37949360 1784 IMR-90 (CVCL_0347) 25497547 AA654988 SIPA1L3 19 37951443 37951448 37959360 7912 SIPA1L3 19 37951144 37951149 37959360 8211 HUVEC-C (CVCL_2959) 25497547
4 Homo Sapiens	CA433157 ANNOTATION OF CHIMERA FUSION GenBank ID: CA433157 FASTA Head Gene (1) Alignment: SIPA1L3 | OMIM: 616655 Tail Gene (2) Alignment: VEPH1 | OMIM: 609594 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23094 19 + 37930026 37930541 0 0 protein-coding 79674 3 - 157443004 157443588 0 0 oncogene, protein-coding 602 hg38 Updated: 2019-04-13 Owner: ChiTaRS	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_011526657.2	1..91 97.1%	+ 19	VEPH1 C9IZY4 C9J379 C9J4U8 C9JRT0 F8WBD3 F8WBQ3 Q14D04 XM_024453746.1	18..602 99.7%	- 3	2 0 5	intron-intron
5 Homo Sapiens	BM971898 ANNOTATION OF CHIMERA FUSION GenBank ID: BM971898 FASTA Head Gene (1) Alignment: SIPA1L3 | OMIM: 616655 Tail Gene (2) Alignment: VEPH1 | OMIM: 609594 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23094 19 + 37930026 37930541 0 0 protein-coding 79674 3 - 157442999 157443588 0 0 oncogene, protein-coding 608 hg38 Updated: 2019-06-06 Owner: ChiTaRS	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_005258671.4	1..91 97.1%	+ 19	VEPH1 C9IZY4 C9J379 C9J4U8 C9JRT0 F8WBD3 F8WBQ3 Q14D04 XM_024453746.1	18..608 99.4%	- 3	2 0 5	intron-intron
6 Homo Sapiens	AI732708 ANNOTATION OF CHIMERA FUSION GenBank ID: AI732708 FASTA Head Gene (1) Alignment: SIPA1L3 | OMIM: 616655 Tail Gene (2) Alignment: RBFOX2 | OMIM: 612149 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23094 19 + 37909696 37909989 0 0 protein-coding 23543 22 + 35900591 35900614 0 0 protein-coding 309 hg38 Updated: 2019-04-14 Owner: ChiTaRS	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_011526657.2	9..302 100.0%	+ 19	RBFOX2 A0A0G2JRA5 A0A0G2JRD1 A0A0G2JSB3 B0QYV1 B0QYY4 B0QYY6 B0QYY7 F8WSN4 O43251 S4R3K7 S4R469 XM_005261428.2	284..307 100.0%	+ 22	1 0 0	intron-intron
7 Homo Sapiens	AI732712 ANNOTATION OF CHIMERA FUSION GenBank ID: AI732712 FASTA Head Gene (1) Alignment: SIPA1L3 | OMIM: 616655 Tail Gene (2) Alignment: RBFOX2 | OMIM: 612149 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23094 19 + 37909696 37909989 0 0 protein-coding 23543 22 + 35900591 35900614 0 0 protein-coding 309 hg38 Updated: 2019-04-14 Owner: ChiTaRS	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_011526657.2	9..302 100.0%	+ 19	RBFOX2 A0A0G2JRA5 A0A0G2JRD1 A0A0G2JSB3 B0QYV1 B0QYY4 B0QYY6 B0QYY7 F8WSN4 O43251 S4R3K7 S4R469 XM_005261428.2	284..307 100.0%	+ 22	1 0 0	intron-intron
8 Homo Sapiens	BI858594 ANNOTATION OF CHIMERA FUSION GenBank ID: BI858594 FASTA Head Gene (1) Alignment: ATF4P4 Tail Gene (2) Alignment: SIPA1L3 | OMIM: 616655 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 100127952 11 + 113790622 113791450 1 1 pseudo 23094 19 + 38103132 38103153 0 0 protein-coding 849 hg38 Updated: 2019-06-06 Owner: ChiTaRS	ATF4P4	1..830 96.1%	+ 11	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_005258671.4	828..849 100.0%	+ 19	1 0 0	exon-intron
9 Homo Sapiens	AI535832 ANNOTATION OF CHIMERA FUSION GenBank ID: AI535832 FASTA Head Gene (1) Alignment: RPL9 | OMIM: 603686 Tail Gene (2) Alignment: SIPA1L3 | OMIM: 616655 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6133 4 - 39454130 39456511 4 1 protein-coding 23094 19 + 37992340 37992666 0 0 protein-coding 465 hg38 Updated: 2019-04-14 Owner: ChiTaRS	RPL9 A0A2R8Y5Y7 B4DLV8 D6RAN4 E7ESE0 H0Y9R4 H0Y9V9 P32969 Q53Z07 NM_000661.4	1..406 96.6%	- 4	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_011526657.2	268..422 95.7%	+ 19	1 0 0	exon-intron
10 Homo Sapiens	BX095085 ANNOTATION OF CHIMERA FUSION GenBank ID: BX095085 FASTA Head Gene (1) Alignment: MAK | OMIM: 154235 Tail Gene (2) Alignment: SIPA1L3 | OMIM: 616655 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4117 6 - 10772331 10772854 3 0 protein-coding 23094 19 + 37997566 37997583 22 0 protein-coding 536 hg38 Updated: 2019-02-02 Owner: ChiTaRS	MAK F8VBW7 P20794 Q8IXN4 XR_926215.3	11..534 98.9%	- 6	SIPA1L3 B2RWP0 M0QX89 M0R2Q7 O60292 Q8IUV1 XM_005258671.4	519..536 95.7%	+ 19	1 0 0	intron-intron

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