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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SHMT2'

Total of fusion sequences: 10 (from 2,403,910 parsed EST/mRNAs. Last update 2020-02-09 10:24:42)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

XM_017025973.1
1..31
100.0%
+
18

NM_001166358.1
18..361
99.8%
-
12
1
0
0
intron-exon
2
Homo Sapiens

XM_017025973.1
1..31
100.0%
+
18

NM_001166358.1
18..445
99.3%
-
12
1
0
0
intron-exon
3
Homo Sapiens

XM_011538675.3
1..559
100.0%
+
12
DISC1FP1
NR_104190.1
557..581
100.0%
+
11
1
0
0
exon-intron
4
Homo Sapiens
LINC00466
NR_038252.3
1..29
100.0%
-
1

NM_001166358.1
18..443
98.2%
-
12
1
0
0
intron-exon
5
Homo Sapiens

XM_011538675.3
2..45
97.6%
+
12

NM_020142.3
46..221
97.6%
+
12
1
0
0
intron-exon
6
Homo Sapiens

XM_011538675.3
1..491
100.0%
+
12

XM_017013960.1
483..505
100.0%
-
8
1
0
0
exon-intron
7
Homo Sapiens

NM_001166358.1
1..34
100.0%
+
12

XM_011536576.2
30..719
97.7%
+
14
1
0
0
exon-intron
8
Homo Sapiens

NM_004074.2
49..493
100.0%
-
11

XM_011538675.3
494..1567
100.0%
+
12
1
0
0
exon-exon
9
Homo Sapiens

NM_001166358.1
36..917
99.3%
+
12

NR_037580.1
913..937
100.0%
-
1
1
0
0
exon-intron
10
Homo Sapiens

NM_004317.3
1..54
100.0%
+
19

NM_001166358.1
46..100
100.0%
-
12
1
0
0
exon-exon

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