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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SHMT1'

Total of fusion sequences: 17 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

NM_001098512.2
18..51
100.0%
+
10

XM_005256767.3
45..1856
99.8%
-
17
1
0
0
intron-exon
2
Homo Sapiens

ENST00000606613
1..299
95.7%
+
6

XM_005256767.3
2..2650
99.8%
-
17
1
0
0
intron-exon
3
Homo Sapiens
SMCR8
Q8TEV9

NM_144775.2
1..192
97.7%
+
17

XM_005256767.3
193..308
97.7%
+
17
4
160
160
intron-exon
4
Homo Sapiens

XM_005256767.3
10..26
96.5%
-
17
SMCR8
Q8TEV9

NM_144775.2
27..263
96.5%
-
17
4
5
4
exon-exon
5
Homo Sapiens

XM_005256767.3
1..2757
99.1%
-
17

NM_006818.3
2753..3088
100.0%
-
1
1
0
0
intron-exon
6
Homo Sapiens

XM_005256767.3
1..2757
99.1%
-
17

NM_006818.3
2753..3088
100.0%
-
1
1
0
0
intron-exon
7
Homo Sapiens

XM_005256767.3
17..163
100.0%
-
17
SMCR8
Q8TEV9

NM_144775.2
164..434
100.0%
-
17
4
0
0
exon-exon
8
Homo Sapiens

XM_005256767.3
17..163
99.5%
-
17
SMCR8
Q8TEV9

NM_144775.2
164..411
99.5%
-
17
4
0
0
exon-exon
9
Homo Sapiens

NM_014553.2
45..321
95.0%
+
2

XM_005256767.3
309..382
98.7%
-
17
2
0
45
intron-intron
10
Homo Sapiens

NM_014553.2
9..323
98.8%
+
2

XM_005256767.3
311..384
98.7%
-
17
2
0
45
intron-intron

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