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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'SH3GL2'

Total of fusion sequences: 7 (from 3,568,812 parsed EST/mRNAs. Last update 2020-07-14 10:36:55)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AB206841 FASTA
UniProtKB: Q3V638 Mutated endophilin A1 BAR domain
Fusion Gene(s): SH3GL2
Head Gene (1) Alignment: SH3GL2 | OMIM: 604465 Tail Gene (2) Alignment: ANKRD17 | OMIM: 615929 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
64569+175792431779133471oncogene260574-731963357319635610protein-coding 678 hg38
Updated: 2019-02-17
Owner: ChiTaRS
XR_001746364.2		1..662
99.9%		+
9
XM_017008011.1		648..669
95.5%		-
4		1
0
0		exon-intron
2
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AB206840 FASTA
UniProtKB: Q3V639 Endophilin A1 BAR domain
Fusion Gene(s): SH3GL2
Head Gene (1) Alignment: SH3GL2 | OMIM: 604465 Tail Gene (2) Alignment: EDEM3 | OMIM: 610214 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
64569+175792431779133471oncogene802671+18473111418473113560protein-coding 744 hg38
Updated: 2019-02-17
Owner: ChiTaRS
XR_001746364.2		1..728
100.0%		+
9
NM_001319960.1		723..744
95.5%		+
1		1
0
0		exon-intron
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BG987713 FASTA
Head Gene (1) Alignment: ARFGAP2 | OMIM: 606908 Tail Gene (2) Alignment: SH3GL2 | OMIM: 604465 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
8436411+471644344716458411protein-coding64569-177969321779707211oncogene 299 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
ArfGap (PF01412, IPR001164, SM00105) 117 87 198 8e-36 108.900 Putative GTPase activating protein for Arf
Updated: 2019-02-21
Owner: ChiTaRS
XM_005253166.2		7..156
98.7%		+
11
XR_001746364.2		157..297
98.6%		-
9		1
0
0		exon-exon
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF934809 FASTA
Head Gene (1) Alignment: SH3GL2 | OMIM: 604465 Tail Gene (2) Alignment: SH3GL2 | OMIM: 604465 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
64569-177961581779633991oncogene64569+177965331779679611oncogene 429 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
RskA (PF10099, IPR018764) 180 1 116 1.7e-05 11.300 Anti-sigma-K factor rskA
BAR (PF03114, IPR004148, SM00721) 239 46 282 7.5e-84 267.200 BAR domain
SH3_2 (PF07653, IPR011511) 55 334 387 3.5e-18 51.400 Variant SH3 domain
Updated: 2019-02-02
Owner: ChiTaRS
XR_001746364.2		1..183
96.2%		-
9
XR_001746364.2		166..429
100.0%		+
9		1
0
0		exon-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AV682393 FASTA
Head Gene (1) Alignment: HLA-A | OMIM: 142800 Tail Gene (2) Alignment: SH3GL2 | OMIM: 604465 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
31056+299454742994576981oncogene,
protein-coding		64569+176986861769917680oncogene 391 hg38
Updated: 2019-02-07
Owner: ChiTaRS
HLA-A
NM_002116.7		1..296
98.4%		+
6
XR_001746364.2		52..320
97.5%		+
9		1
0
0		exon-intron
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AF011019 FASTA
Head Gene (1) Alignment: SH3GL2 | OMIM: 604465 Tail Gene (2) Alignment: BMPR1B | OMIM: 603248 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
64569+176891081768935820oncogene6584-950468609504749030protein-coding 979 hg38
Updated: 2018-10-27
Owner: ChiTaRS
14..240
95.8%		+
9		 15..643
99.6%		-
4		1
0
0		intron-intron
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: EC559413 FASTA
Head Gene (1) Alignment: SH3GL2 | OMIM: 604465 Tail Gene (2) Alignment: MT-ATP6 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
64569+175863131758642600oncogene4508MT+8675878511protein-coding 121 hg38
Updated: 2019-03-25
Owner: ChiTaRS
XM_011518005.3		1..24
100.0%		+
9
MT-ATP6
13..121
99.1%		+
MT		1
0
0		intron-exon

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