Search Database Collection

Result for the search: Gene Name/NCBI ID(s): 'SFTPC'

Total of fusion sequences: 6 (from 393,531 parsed EST/mRNAs. Last update 2018-11-20)

Organism	Fusion: Graphical View, Annotation, PPI	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed, iHOP reference
		Name(s)1	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,17	8	9,10,11	12,25	13,14,15	16	17
Homo Sapiens	ChimerDB BF875520 ANNOTATION OF CHIMERA FUSION GenBank ID: BF875520 FASTA Head Gene (1) Alignment: PDPK1 | OMIM: 605213 Tail Gene (2) Alignment: SFTPC | OMIM: 178620 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5170 16 - 2604669 2604843 NA NA protein-coding 6440 8 + 22019315 22020174 NA NA protein-coding NA hg19 Updated: 2012-12-12 Owner: ChiTaRS	PDPK1 E9PER6 H3BNV5 H3BPR5 H3BPW1 H3BQ10 H3BQA3 O15530 Q9UI25	1..175 100.0%	- 16	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	169..325 99.4%	+ 8	1 0 0
Homo Sapiens	ChimerDB BG529836 ANNOTATION OF CHIMERA FUSION GenBank ID: BG529836 FASTA Head Gene (1) Alignment: C15orf57 Tail Gene (2) Alignment: SFTPC | OMIM: 178620 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 90416 15 - 40824319 40824415 NA NA protein-coding 6440 8 + 22021513 22021987 NA NA protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to CCDC32 (PF14989, IPR028039) 152 21 170 1.7e-65 205.900 Coiled-coil domain containing 32 MRP-S32 (PF10210, IPR019346) 93 322 383 2.1e-19 56.200 Mitochondrial 28S ribosomal protein S32 Updated: 2012-12-12 Owner: ChiTaRS	C15orf57 A0A024R9J9 H0YLI5 H0YLN5 H0YM19 H0YMC0 H0YN78 Q9BV29	1..97 100.0%	- 15	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	89..356 98.6%	+ 8	1 0 0
Homo Sapiens	BF845787 ANNOTATION OF CHIMERA FUSION GenBank ID: BF845787 FASTA Head Gene (1) Alignment: SFTPC | OMIM: 178620 Tail Gene (2) Alignment: CGN | OMIM: 609473 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6440 8 - 22019309 22020159 NA NA protein-coding 57530 1 + 151497469 151497531 NA NA protein-coding NA hg19 Updated: 2012-12-12 Owner: ChiTaRS	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	26..170 99.4%	- 8	CGN A2A3M4 A6PVU7 B9EK46 H0Y4A8 Q9P2M7	160..222 100.0%	+ 1	1 0 0
Homo Sapiens	BQ016733 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ016733 FASTA Head Gene (1) Alignment: SFTPC | OMIM: 178620 Tail Gene (2) Alignment: SFTPC | OMIM: 178620 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6440 8 - 22021876 22021987 NA NA protein-coding 6440 8 + 22021792 22021874 NA NA protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to SP_C-Propep (PF08999, IPR015091) 96 11 103 1.1e-56 174.900 Surfactant protein C, N terminal propeptide BRICHOS (PF04089, IPR007084, SM01039) 86 106 200 5.4e-24 70.500 BRICHOS domain Updated: 2012-12-12 Owner: ChiTaRS	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	15..126 100.0%	- 8	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	124..206 100.0%	+ 8	1 0 0
Homo Sapiens	AI336345 ANNOTATION OF CHIMERA FUSION GenBank ID: AI336345 FASTA Head Gene (1) Alignment: RGMA | OMIM: 607362 Tail Gene (2) Alignment: SFTPC | OMIM: 178620 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 56963 15 + 93586648 93587025 NA NA protein-coding 6440 8 + 22020597 22020698 NA NA protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RGM_N (PF06535, IPR010536) 164 138 312 4.4e-74 234.400 Repulsive guidance molecule (RGM) N-terminus RGM_C (PF06534, IPR009496) 171 316 496 4.3e-75 237.100 Repulsive guidance molecule (RGM) C-terminus Updated: 2012-12-12 Owner: ChiTaRS	RGMA A0A0A0MTQ4 A0A0G2JL92 A1L187 C6G485 F5H7G2 G3V3Z3 G3V4C2 G3V545 Q96B86	1..292 100.0%	+ 15	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	285..386 98.1%	+ 8	1 0 0
Homo Sapiens	BF849240 ANNOTATION OF CHIMERA FUSION GenBank ID: BF849240 FASTA Head Gene (1) Alignment: INPP1 | OMIM: 147263 Tail Gene (2) Alignment: SFTPC | OMIM: 178620 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3628 2 + 190370947 190371003 1 0 protein-coding 6440 8 + 22163530 22164014 2 0 protein-coding 239 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Inositol_P (PF00459, IPR000760) 272 4 94 1.3e-06 14.200 Inositol monophosphatase family Updated: 2016-10-31 Owner: ChiTaRS	INPP1 A0A0S2Z3X1 A0A1D5RMQ4 B5BU62 B8ZZF6 C9J128 C9J173 C9J2N5 C9J2Z6 E7ENF2 E7ET59 E7EUX4 P49441 Q6IBG4 X5DP77 X5DRF6	23..79 100.0%	+ 2	SFTPC A0A0A0MTC9 A0A0S2Z4Q0 C9JYF6 E5RG20 E5RHW5 E5RI64 E5RI92 P11686	76..224 100.0%	+ 8	1 0 0