Result for the search of Gene Name/NCBI ID(s): 'SEC13'

Total of fusion sequences: 10 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	BE161424 ANNOTATION OF CHIMERA FUSION GenBank ID: BE161424 FASTA Head Gene (1) Alignment: KHNYN Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23351 14 - 24439561 24439614 8 1 protein-coding 6396 3 - 10301325 10311987 11 1 protein-coding 549 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RNase_Zc3h12a (PF11977, IPR021869) 156 482 635 8.4e-66 206.700 Zc3h12a-like Ribonuclease NYN domain Updated: 2019-02-22 Owner: ChiTaRS	KHNYN D3DS77 G3V331 G3V3G3 O15037 NM_001290256.1	24..77 100.0%	- 14	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_024453702.1	72..549 99.6%	- 3	1 0 0	exon-exon	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BE161424 KHNYN 14 24439609 24439614 24440794 1180 SEC13 3 10301325 10301330 10308316 6986 GM12878 (CVCL_7526) 25497547
2 Homo Sapiens	BG256737 ANNOTATION OF CHIMERA FUSION GenBank ID: BG256737 FASTA Head Gene (1) Alignment: MRPS10 | OMIM: 611976 Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55173 6 - 42207517 42207858 1 1 protein-coding 6396 3 - 10301586 10301984 10 0 protein-coding 727 hg38 Updated: 2019-02-20 Owner: ChiTaRS	MRPS10 A0A024RD03 P82664 XM_011514725.3	1..339 100.0%	- 6	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_017007020.2	335..725 98.5%	- 3	1 0 0	exon-intron	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BG256737 MRPS10 6 42207854 42207858 42202262 5592 SEC13 3 10301586 10301590 10308316 6726 GM12878 (CVCL_7526) 25497547
3 Homo Sapiens	AW022600 ANNOTATION OF CHIMERA FUSION GenBank ID: AW022600 FASTA Head Gene (1) Alignment: SEC13 | OMIM: 600152 Tail Gene (2) Alignment: LOC101927511 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6396 3 - 10300931 10301262 1 0 protein-coding 101927511 18 + 11913746 11914101 3 0 ncRNA 356 hg38 Updated: 2018-11-17 Owner: ChiTaRS	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735	8..339 100.0%	- 3	LOC101927511	14..355 95.4%	+ 18	0 2802 0	intron-intron
4 Homo Sapiens	BM987477 ANNOTATION OF CHIMERA FUSION GenBank ID: BM987477 FASTA Head Gene (1) Alignment: LOC101927511 Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 101927511 18 - 11913860 11914101 1 1 ncRNA 6396 3 + 10300931 10305109 3 1 protein-coding 457 hg38 Updated: 2019-04-13 Owner: ChiTaRS	LOC101927511 XR_001753359.1	1..232 95.3%	- 18	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_024453701.1	17..457 100.0%	+ 3	3 535 0	exon-exon
5 Homo Sapiens	BM970899 ANNOTATION OF CHIMERA FUSION GenBank ID: BM970899 FASTA Head Gene (1) Alignment: LOC101927511 Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 101927511 18 - 11913860 11914099 1 1 ncRNA 6396 3 + 10300931 10305644 4 1 protein-coding 585 hg38 Updated: 2019-06-06 Owner: ChiTaRS	LOC101927511 XR_001753359.1	1..230 95.3%	- 18	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_024453701.1	15..585 100.0%	+ 3	3 535 0	exon-exon
6 Homo Sapiens	BI859289 ANNOTATION OF CHIMERA FUSION GenBank ID: BI859289 FASTA Head Gene (1) Alignment: SEC13 | OMIM: 600152 Tail Gene (2) Alignment: LOC101927511 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6396 3 - 10300931 10305100 3 1 protein-coding 101927511 18 + 11913746 11914101 1 1 ncRNA 686 hg38 Updated: 2019-06-06 Owner: ChiTaRS	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_024453701.1	1..656 99.4%	- 3	LOC101927511 XR_001753359.1	333..674 95.6%	+ 18	3 56 0	exon-exon
7 Homo Sapiens	BM971801 ANNOTATION OF CHIMERA FUSION GenBank ID: BM971801 FASTA Head Gene (1) Alignment: LOC101927511 Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 101927511 18 - 11913746 11914099 1 1 ncRNA 6396 3 + 10300931 10305156 3 1 protein-coding 728 hg38 Updated: 2019-06-06 Owner: ChiTaRS	LOC101927511 XR_001753359.1	1..340 95.6%	- 18	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_024453701.1	15..725 99.9%	+ 3	3 56 0	exon-exon
8 Homo Sapiens	AV699362 ANNOTATION OF CHIMERA FUSION GenBank ID: AV699362 FASTA Head Gene (1) Alignment: SERPINC1 | OMIM: 107300 Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 462 1 - 173903810 173904067 1 1 protein-coding 6396 3 - 10300015 10300062 10 0 protein-coding 620 hg38 Updated: 2019-02-07 Owner: ChiTaRS	SERPINC1 A0A024R944 A0A0K0Q2Z1 A0A2H4R0R4 A0A2U8KGL5 A0A481U728 A0A481U987 P01008 Q7KYY4 Q8TCE1 V9GZX9 XM_005245198.4	342..599 95.4%	- 1	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 ENST00000337354	590..620 100.0%	- 3	1 0 0	exon-intron
9 Homo Sapiens	DW441224 ANNOTATION OF CHIMERA FUSION GenBank ID: DW441224 FASTA Head Gene (1) Alignment: TOMM7 | OMIM: 607980 Tail Gene (2) Alignment: SEC13 | OMIM: 600152 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 54543 7 - 22818008 22822879 3 0 protein-coding 6396 3 - 10301081 10301203 11 1 protein-coding 379 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Tom7 (PF08038, IPR012621) 41 41 75 2.3e-15 42.400 TOM7 family Updated: 2019-01-25 Owner: ChiTaRS	TOMM7 A0A087WZY2 A6NIV2 B5MD00 Q75MR5 Q9P0U1 NM_019059.3	18..262 99.6%	- 7	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 XM_017007020.2	257..379 99.2%	- 3	1 0 0	intron-exon
10 Homo Sapiens	BF854775 ANNOTATION OF CHIMERA FUSION GenBank ID: BF854775 FASTA Head Gene (1) Alignment: SEC13 | OMIM: 600152 Tail Gene (2) Alignment: GRIPAP1 | OMIM: 300408 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6396 3 - 10298948 10299057 0 0 protein-coding 56850 X + 48998096 48998381 1 0 protein-coding 389 hg38 Updated: 2019-04-10 Owner: ChiTaRS	SEC13 A8MXL6 C9J0S2 C9JBJ5 C9JIB6 E7ERC8 P55735 ENST00000337354	1..110 96.4%	- 3	GRIPAP1 A0A075B793 A0A087WT45 A0A087WV84 A0A087WW92 A0A087WWF2 A0A087WXA6 A0A087WZF5 Q4V328 XM_017029659.2	104..389 99.0%	+ X	1 0 0	intron-intron

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