Result for the search of Gene Name/NCBI ID(s): 'SAMM50'

Total of fusion sequences: 22 (from 12,143,238 parsed EST/mRNAs. Last update: 2021-04-05 16:54:11)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB CB528606 ANNOTATION OF CHIMERA FUSION GenBank ID: CB528606 FASTA Head Gene (1) Alignment: SAMM50 | OMIM: 612058 Tail Gene (2) Alignment: UNC5B | OMIM: 607870 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 25813 22 - 43990374 43996529 15 1 protein-coding 219699 10 - 71301959 71302391 1 1 tumor suppressor, protein-coding 667 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Bac_surface_Ag (PF01103, IPR000184) 324 151 468 3.6e-67 213.200 Surface antigen Updated: 2019-02-21 Owner: ChiTaRS	SAMM50 Q9Y512 NM_015380.4	19..243 99.6%	- 22	UNC5B Q8IZJ1 NM_170744.4	235..667 100.0%	- 10	1 0 0	exon-exon
2 Homo Sapiens	EC500215 ANNOTATION OF CHIMERA FUSION GenBank ID: EC500215 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955848 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 122 hg38 Updated: 2019-04-10 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	1..100 99.0%	- 3	SAMM50 Q9Y512 NM_015380.4	34..119 95.4%	- 22	1 0 0	intron-intron
3 Homo Sapiens	EC455776 ANNOTATION OF CHIMERA FUSION GenBank ID: EC455776 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955848 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 122 hg38 Updated: 2019-04-13 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	1..100 99.0%	- 3	SAMM50 Q9Y512 NM_015380.4	34..119 95.4%	- 22	1 0 0	intron-intron
4 Homo Sapiens	EC455537 ANNOTATION OF CHIMERA FUSION GenBank ID: EC455537 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955844 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 119 hg38 Updated: 2019-04-13 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	7..97 98.9%	- 3	SAMM50 Q9Y512 NM_015380.4	34..116 96.4%	- 22	1 0 0	intron-intron
5 Homo Sapiens	EC442077 ANNOTATION OF CHIMERA FUSION GenBank ID: EC442077 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955844 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 124 hg38 Updated: 2019-04-14 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	7..102 99.0%	- 3	SAMM50 Q9Y512 NM_015380.4	36..121 95.4%	- 22	1 0 0	intron-intron
6 Homo Sapiens	EC507146 ANNOTATION OF CHIMERA FUSION GenBank ID: EC507146 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955851 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 131 hg38 Updated: 2019-04-08 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	9..109 100.0%	- 3	SAMM50 Q9Y512 NM_015380.4	43..128 95.4%	- 22	1 0 0	intron-intron
7 Homo Sapiens	EC498788 ANNOTATION OF CHIMERA FUSION GenBank ID: EC498788 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955844 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 123 hg38 Updated: 2019-04-10 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	7..101 100.0%	- 3	SAMM50 Q9Y512 NM_015380.4	35..120 95.4%	- 22	1 0 0	intron-intron
8 Homo Sapiens	EC501532 ANNOTATION OF CHIMERA FUSION GenBank ID: EC501532 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955841 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 133 hg38 Updated: 2019-04-10 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	21..111 97.8%	- 3	SAMM50 Q9Y512 NM_015380.4	47..130 95.2%	- 22	1 0 0	intron-intron
9 Homo Sapiens	EC542676 ANNOTATION OF CHIMERA FUSION GenBank ID: EC542676 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955844 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 121 hg38 Updated: 2019-03-25 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	2..97 100.0%	- 3	SAMM50 Q9Y512 NM_015380.4	31..116 95.4%	- 22	1 0 0	intron-intron
10 Homo Sapiens	EC455797 ANNOTATION OF CHIMERA FUSION GenBank ID: EC455797 FASTA Head Gene (1) Alignment: IQCG | OMIM: 612477 Tail Gene (2) Alignment: SAMM50 | OMIM: 612058 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84223 3 - 197955749 197955841 0 0 protein-coding 25813 22 - 43957305 43957390 0 0 protein-coding 121 hg38 Updated: 2019-04-13 Owner: ChiTaRS	IQCG B9EG57 C9J6M9 C9JKX8 C9JUC1 Q9H095 XR_002959600.1	10..99 98.9%	- 3	SAMM50 Q9Y512 NM_015380.4	35..118 95.2%	- 22	1 0 0	intron-intron

T O P