Result for the search of Gene Name/NCBI ID(s): 'RTN4'

Total of fusion sequences: 40 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs W68781 ANNOTATION OF CHIMERA FUSION GenBank ID: W68781 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: ANAPC4 | OMIM: 606947 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 - 54982581 55010206 7 1 oncogene, tumor suppressor 29945 4 + 25418339 25418392 1 1 protein-coding 448 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to CENP-B_dimeris (PF09026, IPR015115) 100 26 66 0.0025 4.500 Centromere protein B dimerisation domain Reticulon (PF02453, IPR003388) 157 1005 1053 5.1e-12 32.200 Reticulon Updated: 2019-02-21 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_007008.2	1..401 98.8%	- 2	ANAPC4 D6RAP6 D6RFM7 Q9UJX5 XM_017008138.2	395..448 100.0%	+ 4	2 98 0	exon-exon
2 Homo Sapiens	SplGraphs DA313964 ANNOTATION OF CHIMERA FUSION GenBank ID: DA313964 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: ENTPD1 | OMIM: 601752 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 - 54972531 54972616 1 1 oncogene, tumor suppressor 953 10 + 95756163 95842467 10 1 protein-coding 550 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to DUF3682 (PF12446, IPR022152) 130 83 139 0.013 2.200 Protein of unknown function (DUF3682) Reticulon (PF02453, IPR003388) 157 1086 1250 4e-50 156.000 Reticulon Updated: 2019-02-21 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	1..86 100.0%	- 2	ENTPD1 A0A0U1RQZ5 A0A0U1RR44 A0A1W2PQK8 L8E7N4 P49961 NM_001776.5	87..550 99.8%	+ 10	1 0 0	exon-exon
3 Homo Sapiens	ChimerDB W68688 ANNOTATION OF CHIMERA FUSION GenBank ID: W68688 FASTA Head Gene (1) Alignment: ANAPC4 | OMIM: 606947 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29945 4 - 25418339 25418490 29 1 protein-coding 57142 2 + 54982581 54987699 6 1 oncogene, tumor suppressor 448 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to ANAPC4_WD40 (PF12894, IPR024977) 92 26 118 8.9e-30 89.200 Anaphase-promoting complex subunit 4 WD40 domain ANAPC4 (PF12896, IPR024790) 204 232 431 6.6e-62 194.700 Anaphase-promoting complex, cyclosome, subunit 4 Updated: 2019-01-25 Owner: ChiTaRS	ANAPC4 D6RAP6 D6RFM7 Q9UJX5 XM_017008138.2	6..157 100.0%	- 4	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	151..432 99.7%	+ 2	2 98 0	exon-exon
4 Homo Sapiens	ChimerDB CK001143 ANNOTATION OF CHIMERA FUSION GenBank ID: CK001143 FASTA Head Gene (1) Alignment: TIMM17A | OMIM: 605057 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10440 1 + 201955510 201955552 1 1 protein-coding 57142 2 - 54972783 54974765 10 1 oncogene, tumor suppressor 635 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Reticulon (PF02453, IPR003388) 157 9 63 2.7e-19 55.800 Reticulon Updated: 2019-02-21 Owner: ChiTaRS	TIMM17A A0A024R9A5 A0PJ74 Q7RU05 Q99595 NM_006335.2	4..46 100.0%	+ 1	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	46..633 99.5%	- 2	1 0 0	exon-exon
5 Homo Sapiens	SplGraphs BP251731 ANNOTATION OF CHIMERA FUSION GenBank ID: BP251731 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 - 55209673 55252279 NA NA oncogene, tumor suppressor 57142 2 - 55253540 55253743 NA NA oncogene, tumor suppressor NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to DUF3682 (PF12446, IPR022152) 130 3 58 0.0076 3.000 Protein of unknown function (DUF3682) CENP-B_dimeris (PF09026, IPR015115) 100 26 66 0.0039 3.900 Centromere protein B dimerisation domain Updated: 2012-12-12 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3	1..382 100.0%	- 2	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3	381..584 100.0%	- 2	0 25034 23775	exon-exon
6 Homo Sapiens	EC455303 ANNOTATION OF CHIMERA FUSION GenBank ID: EC455303 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: MTIF2 | OMIM: 603766 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 + 55128882 55128937 0 0 oncogene, tumor suppressor 4528 2 + 55260233 55260293 0 0 protein-coding 117 hg38 Updated: 2019-04-13 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	1..59 96.2%	+ 2	MTIF2 A0A1D5RMP2 A0A1Y8EJN7 B5MCU1 C9JIY5 E7EW07 H7C213 P46199 Q05DA1 Q6P1N2 Q7Z5U0 XM_017004162.2	60..117 96.2%	+ 2	1 0 0	intron-intron	2HiC Hi-C contacts of chimeric junction Fusion Gene1 chromosome1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromosome2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cellosaurus ID) 2 3 19 - - 32 - 8 25 - - 33 - 34 EC455303 RTN4 2 55128936 55128937 55122864 6072 MTIF2 2 55260233 55260234 55252864 7369 GM12878 (CVCL_7526) EC455303 RTN4 2 55128936 55128937 55132864 3927 MTIF2 2 55260233 55260234 55252864 7369 GM12878 (CVCL_7526)
7 Homo Sapiens	BE007854 ANNOTATION OF CHIMERA FUSION GenBank ID: BE007854 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 - 55209651 55209791 NA NA oncogene, tumor suppressor 57142 2 - 55214639 55214836 NA NA oncogene, tumor suppressor NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to CENP-B_dimeris (PF09026, IPR015115) 100 26 66 0.0028 4.400 Centromere protein B dimerisation domain Reticulon (PF02453, IPR003388) 157 1005 1082 2.3e-17 49.600 Reticulon Ribosomal_60s (PF00428, IPR001813) 88 1273 1306 0.048 0.600 60s Acidic ribosomal protein Updated: 2012-12-12 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3	8..146 100.0%	- 2	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3	145..342 100.0%	- 2	0 42488 38901	exon-exon
8 Homo Sapiens	CN418139 ANNOTATION OF CHIMERA FUSION GenBank ID: CN418139 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 - 55276992 55277313 NA NA oncogene, tumor suppressor 57142 2 - 55277315 55277362 NA NA oncogene, tumor suppressor NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to FoP_duplication (PF13865, IPR025715) 81 21 69 0.015 2.200 C-terminal duplication domain of Friend of PRMT1 CENP-B_dimeris (PF09026, IPR015115) 100 144 189 0.00077 6.200 Centromere protein B dimerisation domain Reticulon (PF02453, IPR003388) 157 1128 1292 2.3e-50 156.800 Reticulon Ribosomal_60s (PF00428, IPR001813) 88 1281 1314 0.048 0.600 60s Acidic ribosomal protein Updated: 2012-12-12 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3	1..322 100.0%	- 2	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3	323..370 100.0%	- 2	0 25034 23775	exon-exon
9 Homo Sapiens	W27023 ANNOTATION OF CHIMERA FUSION GenBank ID: W27023 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 + 55010231 55010302 7 1 oncogene, tumor suppressor 57142 2 - 54982633 55010225 6 1 oncogene, tumor suppressor 639 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Reticulon (PF02453, IPR003388) 157 198 306 2.2e-33 101.600 Reticulon Updated: 2019-02-23 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_007008.2	27..98 98.6%	+ 2	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	95..463 99.8%	- 2	0 22613 22669	exon-exon
10 Homo Sapiens	BE694253 ANNOTATION OF CHIMERA FUSION GenBank ID: BE694253 FASTA Head Gene (1) Alignment: RTN4 | OMIM: 604475 Tail Gene (2) Alignment: RTN4 | OMIM: 604475 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57142 2 + 54987562 54987700 6 1 oncogene, tumor suppressor 57142 2 + 54982515 54987612 6 1 oncogene, tumor suppressor 418 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to CENP-B_dimeris (PF09026, IPR015115) 100 26 66 0.0028 4.300 Centromere protein B dimerisation domain Reticulon (PF02453, IPR003388) 157 1005 1105 2.6e-14 39.600 Reticulon Updated: 2019-02-20 Owner: ChiTaRS	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	1..139 100.0%	+ 2	RTN4 A0A0U1RQR6 A6XGP7 C9J685 D6W5C2 F8W914 H7C106 Q3LIF1 Q3LIF4 Q53R94 Q53RF4 Q53SY1 Q6IPN0 Q9NQC3 NM_001321904.1	138..399 98.1%	+ 2	0 12870 9771	exon-exon

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