Search Database Collection

Result for the search: Gene Name/NCBI ID(s): 'RNF4'

Total of fusion sequences: 10 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Hi-C, RNAseq, Mass-spec evidences	Fusion type, Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	16	17
Homo Sapiens	SplGraphs BM554139 ANNOTATION OF CHIMERA FUSION GenBank ID: BM554139 FASTA Head Gene (1) Alignment: RNF4 | OMIM: 602850 Tail Gene (2) Alignment: DCTD | OMIM: 607638 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6047 4 + 2469170 2469258 1 1 protein-coding 1635 4 - 182891050 182915576 8 1 protein-coding 1083 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to dCMP_cyt_deam_1 (PF00383, IPR002125) 101 122 238 3.4e-32 96.700 Cytidine and deoxycytidylate deaminase zinc-binding region Updated: 2019-02-21 Owner: ChiTaRS	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	25..113 98.9%	+ 4	DCTD D6R9P0 D6R9S0 D6RAD7 D6RAR9 D6RBJ9 D6RBN2 D6RC36 D6RD72 D6RIG3 D6RJA9 P32321	113..1011 98.1%	- 4	1 0 0
Homo Sapiens	ChimerDB AU125424 ANNOTATION OF CHIMERA FUSION GenBank ID: AU125424 FASTA Head Gene (1) Alignment: STK24 | OMIM: 604984 Tail Gene (2) Alignment: RNF4 | OMIM: 602850 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8428 13 - 98463807 98475344 8 1 protein-coding 6047 4 + 2469143 2490496 8 1 protein-coding 806 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Pkinase (PF00069, IPR000719) 264 36 285 4.1e-74 235.300 Protein kinase domain Updated: 2019-02-21 Owner: ChiTaRS	STK24 B4DR80 H0Y630 L8E7H5 Q5JV98 Q5JV99 Q5U0E6 Q6FG81 Q6P0Y1 Q9Y6E0	1..469 100.0%	- 13	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	469..754 96.3%	+ 4	1 0 0
Homo Sapiens	EC557471 ANNOTATION OF CHIMERA FUSION GenBank ID: EC557471 FASTA Head Gene (1) Alignment: SMAGP Tail Gene (2) Alignment: RNF4 | OMIM: 602850 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57228 12 - 51268635 51268720 0 0 protein-coding 6047 4 + 2525710 2525797 0 0 protein-coding 101 hg38 Updated: 2019-04-05 Owner: ChiTaRS	SMAGP A0A0A0MRX0 Q0VAQ4 S4R3E1 S4R405 S4R466	15..98 98.2%	- 12	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	22..101 96.3%	+ 4	1 0 0
Homo Sapiens	AX381852 ANNOTATION OF CHIMERA FUSION GenBank ID: AX381852 FASTA Head Gene (1) Alignment: RNF4 | OMIM: 602850 Tail Gene (2) Alignment: PXYLP1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6047 4 - 2472605 2472626 2 0 protein-coding 92370 3 - 141236063 141236389 7 0 protein-coding 346 hg38 Updated: 2019-02-17 Owner: ChiTaRS	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	2..23 100.0%	- 4	PXYLP1 A0A1B0GUH7 A0A1B0GWB5 B7Z3R9 B7Z4T2 D6R928 D6RDP0 D6RE60 D6RGE3 E9PDB7 Q8TE99	20..346 99.7%	- 3	1 0 0
Homo Sapiens	AI468269 ANNOTATION OF CHIMERA FUSION GenBank ID: AI468269 FASTA Head Gene (1) Alignment: RNF4 | OMIM: 602850 Tail Gene (2) Alignment: FAM193A Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6047 4 + 2504926 2504965 0 0 protein-coding 8603 4 + 2641279 2641435 0 0 protein-coding 151 hg38 Updated: 2019-04-13 Owner: ChiTaRS	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	13..52 95.5%	+ 4	FAM193A A0A1B0GVL4 D6RFZ4 E7EUR8 P78312	53..151 95.5%	+ 4	1 0 0
Homo Sapiens	DL127869 ANNOTATION OF CHIMERA FUSION GenBank ID: DL127869 FASTA Head Gene (1) Alignment: ACAT2 | OMIM: 100678 Tail Gene (2) Alignment: RNF4 | OMIM: 602850 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 39 6 + 159778682 159778898 9 1 protein-coding 6047 4 + 2472605 2472626 7 0 protein-coding 396 hg38 Updated: 2019-02-17 Owner: ChiTaRS	ACAT2 Q9BWD1	1..217 100.0%	+ 6	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	215..236 100.0%	+ 4	1 0 0
Homo Sapiens	DM112980 ANNOTATION OF CHIMERA FUSION GenBank ID: DM112980 FASTA Head Gene (1) Alignment: ACAT2 | OMIM: 100678 Tail Gene (2) Alignment: RNF4 | OMIM: 602850 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 39 6 + 159778682 159778898 9 1 protein-coding 6047 4 + 2472605 2472626 7 0 protein-coding 396 hg38 Updated: 2019-02-17 Owner: ChiTaRS	ACAT2 Q9BWD1	1..217 100.0%	+ 6	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	215..236 100.0%	+ 4	1 0 0
Homo Sapiens	EC547642 ANNOTATION OF CHIMERA FUSION GenBank ID: EC547642 FASTA Head Gene (1) Alignment: POLN | OMIM: 610887 Tail Gene (2) Alignment: RNF4 | OMIM: 602850 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 353497 4 + 2230066 2230144 0 0 protein-coding 6047 4 + 2473661 2474127 0 0 protein-coding 113 hg38 Updated: 2019-03-25 Owner: ChiTaRS	POLN H0YA88 Q7Z5Q5	1..78 96.5%	+ 4	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	79..113 96.5%	+ 4	1 0 0
Homo Sapiens	AX381622 ANNOTATION OF CHIMERA FUSION GenBank ID: AX381622 FASTA Head Gene (1) Alignment: RNF4 | OMIM: 602850 Tail Gene (2) Alignment: H2AFZ | OMIM: 142763 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6047 4 - 2472604 2472626 2 0 protein-coding 3015 4 + 99948088 99948932 5 1 protein-coding 579 hg38 Updated: 2019-02-17 Owner: ChiTaRS	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	2..24 100.0%	- 4	H2AFZ P0C0S5	22..579 100.0%	+ 4	2 0 3
Homo Sapiens	AX381654 ANNOTATION OF CHIMERA FUSION GenBank ID: AX381654 FASTA Head Gene (1) Alignment: RNF4 | OMIM: 602850 Tail Gene (2) Alignment: H2AFZ | OMIM: 142763 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6047 4 - 2472605 2472626 2 0 protein-coding 3015 4 + 99948085 99948860 5 0 protein-coding 511 hg38 Updated: 2019-02-17 Owner: ChiTaRS	RNF4 D3DVQ6 D6R9E0 D6RA71 D6RAD8 D6RBQ7 D6RBZ1 D6RJ08 D6RJF5 H0YAI5 P78317	2..23 100.0%	- 4	H2AFZ P0C0S5	23..511 99.4%	+ 4	2 0 3