Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'RNF4'

Total of fusion sequences: 10 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs
NM_002938.4
25..113
98.9%
+
4

NM_001351748.1
113..1011
98.1%
-
4
1
0
0
exon-exon
2
Homo Sapiens
ChimerDB
XM_024449426.1
1..469
100.0%
-
13

NM_002938.4
469..754
96.3%
+
4
1
0
0
exon-exon
3
Homo Sapiens
ACAT2
Q9BWD1

NM_001303253.1
1..217
100.0%
+
6

NM_001185009.2
215..236
100.0%
+
4
1
0
0
exon-intron
4
Homo Sapiens
ACAT2
Q9BWD1

NM_001303253.1
1..217
100.0%
+
6

NM_001185009.2
215..236
100.0%
+
4
1
0
0
exon-intron
5
Homo Sapiens

NM_001185009.2
2..24
100.0%
-
4

NM_002106.3
22..579
100.0%
+
4
2
0
3
intron-exon
6
Homo Sapiens

NM_001185009.2
2..23
100.0%
-
4

NM_002106.3
23..511
99.4%
+
4
2
0
3
intron-intron
7
Homo Sapiens

NM_001033873.1
15..98
98.2%
-
12

ENST00000506706
22..101
96.3%
+
4
1
0
0
intron-intron
8
Homo Sapiens

NM_001185009.2
2..23
100.0%
-
4

XM_017007511.1
20..346
99.7%
-
3
1
0
0
intron-intron
9
Homo Sapiens

NM_001185009.2
13..52
95.5%
+
4

XR_001741342.2
53..151
95.5%
+
4
1
0
0
intron-intron
10
Homo Sapiens

NM_181808.3
1..78
96.5%
+
4

NM_001185009.2
79..113
96.5%
+
4
1
0
0
intron-intron

T o p