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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'RARB'

Total of fusion sequences: 20 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens
NM_001290216.2
1..7
98.2%
+
3

NM_001068.3
8..453
98.2%
+
3
2
186
5
exon-exon
Homo Sapiens
NM_001290216.2
1..10
99.0%
+
3

NM_001068.3
11..502
99.0%
+
3
2
186
5
exon-exon
Homo Sapiens
NM_001068.3
1..22
97.7%
-
3

NM_001290216.2
23..84
97.7%
-
3
0
65535
4385
intron-intron
Homo Sapiens
NM_001290216.2
4..30
100.0%
-
3

NM_001317771.1
23..325
100.0%
+
8
1
0
0
intron-exon
Homo Sapiens
NM_001317771.1
9..311
100.0%
-
8

NM_001290216.2
304..330
100.0%
+
3
1
0
0
exon-intron
Mus musculus
NM_001289760.1
6..27
100.0%
-
14
Olfr1168
Q7TR25

ENSMUST00000215996
27..667
100.0%
-
2
1
0
0
intron-exon
Homo Sapiens
NM_001290216.2
2..29
100.0%
+
3

NR_135229.1
9..405
96.9%
+
3
1
0
0
intron-exon
Homo Sapiens
NM_001290216.2
12..39
100.0%
-
3

XM_017017145.1
30..531
100.0%
+
11
1
0
0
intron-exon
Mus musculus
NM_001166584.1
1..22
95.5%
-
7

NM_001289760.1
21..517
100.0%
+
14
1
0
0
intron-exon
Homo Sapiens
NM_001290216.2
1..25
100.0%
+
3
YBX1P10 9..341
98.5%
+
9
1
0
0
intron-exon

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