Result for the search of Gene Name/NCBI ID(s): 'RAP2C'

Total of fusion sequences: 6 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	DA833583 ANNOTATION OF CHIMERA FUSION GenBank ID: DA833583 FASTA Head Gene (1) Alignment: RAP2C Tail Gene (2) Alignment: RAP2C Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57826 X - 131342264 131342605 NA NA oncogene, protein-coding 57826 X - 131344197 131344503 NA NA oncogene, protein-coding NA hg19 Updated: 2012-12-12 Owner: ChiTaRS	RAP2C A0A087X2C3 Q9Y3L5	1..342 99.8%	- X	RAP2C A0A087X2C3 Q9Y3L5	340..647 97.8%	- X	0 65535 65535	exon-exon
2 Homo Sapiens	BG986113 ANNOTATION OF CHIMERA FUSION GenBank ID: BG986113 FASTA Head Gene (1) Alignment: RAP2C Tail Gene (2) Alignment: RAP2C Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57826 X + 132204282 132204652 1 1 oncogene, protein-coding 57826 X - 132204312 132204368 7 1 oncogene, protein-coding 418 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Ras (PF00071, IPR001806, SM00173) 162 254 415 3e-58 182.200 Ras family Updated: 2019-02-21 Owner: ChiTaRS	RAP2C A0A087X2C3 Q9Y3L5 NR_073150.1	1..367 96.2%	+ X	RAP2C A0A087X2C3 Q9Y3L5 NR_073150.1	362..418 96.5%	- X	1 0 0	exon-exon
3 Homo Sapiens	BQ314972 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ314972 FASTA Head Gene (1) Alignment: RAP2C Tail Gene (2) Alignment: RAP2C Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57826 X + 132204282 132204652 1 1 oncogene, protein-coding 57826 X - 132204312 132204368 7 1 oncogene, protein-coding 418 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Ras (PF00071, IPR001806, SM00173) 162 254 415 3e-58 182.200 Ras family Updated: 2019-02-21 Owner: ChiTaRS	RAP2C A0A087X2C3 Q9Y3L5 NR_073150.1	1..367 96.2%	+ X	RAP2C A0A087X2C3 Q9Y3L5 NR_073150.1	362..418 96.5%	- X	1 0 0	exon-exon
4 Homo Sapiens	EC581445 ANNOTATION OF CHIMERA FUSION GenBank ID: EC581445 FASTA Head Gene (1) Alignment: RAP2C Tail Gene (2) Alignment: MTATP6P1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57826 X - 132204104 132204123 1 1 oncogene, protein-coding 106480796 1 + 633985 634086 0 0 pseudo 113 hg38 Updated: 2019-03-25 Owner: ChiTaRS	RAP2C A0A087X2C3 Q9Y3L5 NR_073150.1	2..21 100.0%	- X	MTATP6P1	13..113 98.0%	+ 1	1 0 0	exon-intron
5 Homo Sapiens	DB310659 ANNOTATION OF CHIMERA FUSION GenBank ID: DB310659 FASTA Head Gene (1) Alignment: SLIRP | OMIM: 610211 Tail Gene (2) Alignment: RAP2C Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 81892 14 - 77708107 77717594 5 1 protein-coding 57826 X + 132209007 132209166 6 0 oncogene, protein-coding 527 hg38 Updated: 2019-02-21 Owner: ChiTaRS	SLIRP A0A087WUN7 G3V2S9 G3V4X6 H0YJ07 H0YJ40 H0YJI1 H0YJU7 H0YJW7 Q9GZT3 NR_052025.1	1..368 99.8%	- 14	RAP2C A0A087X2C3 Q9Y3L5 NR_073150.1	368..527 99.4%	+ X	1 0 0	exon-intron
6 Homo Sapiens	AI669709 ANNOTATION OF CHIMERA FUSION GenBank ID: AI669709 FASTA Head Gene (1) Alignment: DOK4 | OMIM: 608333 Tail Gene (2) Alignment: RAP2C Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55715 16 - 57471736 57472007 1 1 protein-coding 57826 X + 132218102 132218138 1 1 oncogene, protein-coding 451 hg38 Updated: 2019-04-13 Owner: ChiTaRS	DOK4 A0A024R6S2 A0A1B0GX86 H3BN90 H3BPY9 H3BQ19 H3BS85 H3BSK0 H3BST9 H3BTI4 H3BTI7 H3BTK2 H3BV67 H3BVB4 Q8TEW6 NM_018110.3	1..273 98.2%	- 16	RAP2C A0A087X2C3 Q9Y3L5 NM_021183.4	245..281 100.0%	+ X	1 0 0	exon-exon

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