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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Psap'

Total of fusion sequences: 43 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AK205278 FASTA
Head Gene (1) Alignment: Tbc1d9 Tail Gene (2) Alignment: Psap Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
713108+831706808317077600protein-coding1915610+603023146030250711protein-coding 296 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_001111304.1		8..104
98.0%		+
8
XM_017313849.1		103..296
100.0%		+
10		11
88
0		intron-exon
2
Mus musculus		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AK204205 FASTA
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Egln2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+602949766029506411protein-coding1124067-271586642715880711 252 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XM_017313849.1		1..89
98.9%		+
10
NM_053208.4		88..231
100.0%		-
7		1
0
0		exon-exon
3
Mus musculus		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW231092 FASTA
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Med15 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+602946276029472011protein-coding9411216-176557191765579411protein-coding 165 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XM_017313849.1		1..94
100.0%		+
10
XM_006522779.3		90..165
100.0%		-
16		1
0
0		exon-exon
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI313913 FASTA
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Psap Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610-602997796030259051protein-coding1915610-603002566030056521protein-coding 439 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XM_017313849.1		1..365
100.0%		-
10
XM_017313849.1		362..439
100.0%		-
10		0
1015
190		exon-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromosome1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromosome2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cellosaurus ID)
2319--32-825--33-34
AI313913 Psap 10 60302587 60302590 60300000 2587 Psap 10 60300256 60300259 60300000 256 Patski (CVCL_Y494), GSM2544836, GSM2544839
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001146123 FASTA
UniProtKB: Q3UAS4 Uncharacterized protein
Fusion Gene(s): Psap
UniProtKB: Q61207 Prosaposin (Sulfated glycoprotein 1) (SGP-1) [Cleaved into: Saposin-A; Saposin-B-Val; Saposin-B; Saposin-C; Saposin-D]
Fusion Gene(s): Psap Sgp1
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Tbc1d9 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+6027762860302600151protein-coding713108-831706668317090600protein-coding 2640 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017313849.1		1..2624
100.0%		+
10
NM_001111304.1		2400..2640
99.6%		-
8		11
0
0		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001146124 FASTA
UniProtKB: E9PZ00 Prosaposin
Fusion Gene(s): Psap
UniProtKB: Q3TWM9 Uncharacterized protein (Fragment)
Fusion Gene(s): Psap
UniProtKB: Q3UE29 Uncharacterized protein
Fusion Gene(s): Psap
UniProtKB: Q61207 Prosaposin (Sulfated glycoprotein 1) (SGP-1) [Cleaved into: Saposin-A; Saposin-B-Val; Saposin-B; Saposin-C; Saposin-D]
Fusion Gene(s): Psap Sgp1
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Tbc1d9 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+6028446160302600141protein-coding713108-831706668317090600protein-coding 2583 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017313849.1		1..2567
100.0%		+
10
NM_001111304.1		2343..2583
99.6%		-
8		11
0
0		exon-intron
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001146122 FASTA
UniProtKB: Q3TXJ0 Uncharacterized protein
Fusion Gene(s): Psap
UniProtKB: Q61207 Prosaposin (Sulfated glycoprotein 1) (SGP-1) [Cleaved into: Saposin-A; Saposin-B-Val; Saposin-B; Saposin-C; Saposin-D]
Fusion Gene(s): Psap Sgp1
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Tbc1d9 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+6027762860302600151protein-coding713108-831706668317090600protein-coding 2664 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017313849.1		1..2648
100.0%		+
10
NM_001111304.1		2424..2664
99.6%		-
8		11
0
0		exon-intron
8
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001146121 FASTA
UniProtKB: B2RUD7 Psap protein
Fusion Gene(s): Psap
UniProtKB: Q61207 Prosaposin (Sulfated glycoprotein 1) (SGP-1) [Cleaved into: Saposin-A; Saposin-B-Val; Saposin-B; Saposin-C; Saposin-D]
Fusion Gene(s): Psap Sgp1
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Tbc1d9 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+6027762860302600151protein-coding713108-831706668317090600protein-coding 2673 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017313849.1		1..2657
100.0%		+
10
NM_001111304.1		2433..2673
99.6%		-
8		11
0
0		exon-intron
9
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_011179 FASTA
UniProtKB: Q3UFE8 Prosaposin, isoform CRA_e
Fusion Gene(s): Psap mCG_61290
UniProtKB: Q61207 Prosaposin (Sulfated glycoprotein 1) (SGP-1) [Cleaved into: Saposin-A; Saposin-B-Val; Saposin-B; Saposin-C; Saposin-D]
Fusion Gene(s): Psap Sgp1
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Tbc1d9 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+6027762860302600151protein-coding713108-831706668317090600protein-coding 2676 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017313849.1		1..2660
100.0%		+
10
NM_001111304.1		2436..2676
99.6%		-
8		11
0
0		exon-intron
10
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001146120 FASTA
UniProtKB: Q61207 Prosaposin (Sulfated glycoprotein 1) (SGP-1) [Cleaved into: Saposin-A; Saposin-B-Val; Saposin-B; Saposin-C; Saposin-D]
Fusion Gene(s): Psap Sgp1
UniProtKB: Q8BFQ1 Prosaposin
Fusion Gene(s): Psap mCG_61290
Head Gene (1) Alignment: Psap Tail Gene (2) Alignment: Tbc1d9 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1915610+6027762860302600151protein-coding713108-831706668317090600protein-coding 2667 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017313849.1		1..2651
100.0%		+
10
NM_001111304.1		2427..2667
99.6%		-
8		11
0
0		exon-intron

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