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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'Papola'

Total of fusion sequences: 7 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Mus musculusSplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AK190027 FASTA
Head Gene (1) Alignment: Papola Tail Gene (2) Alignment: Grn Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1878912+10583835610583857411protein-coding1482411+10243668810243680511protein-coding 346 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XM_006515596.3		1..219
99.6%		+
12
NM_008175.4		216..333
100.0%		+
11		1
0
0		exon-exon
Mus musculusSplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI225371 FASTA
Head Gene (1) Alignment: Ptov1 Tail Gene (2) Alignment: Papola Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
841137-448649554486594520protein-coding1878912+10580962210580970511protein-coding 603 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XR_391372.3		1..524
97.7%		-
7
XM_006515596.3		520..603
96.4%		+
12		1
0
0		intron-exon
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC018498 FASTA
UniProtKB: Q3UJ81 Nuclear envelope phosphatase-regulatory subunit 1 (NEP1-R1) (Transmembrane protein 188)
Fusion Gene(s): Cnep1r1 Tmem188
Head Gene (1) Alignment: Cnep1r1 Tail Gene (2) Alignment: Papola Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
3820308+881187878813511061protein-coding1878912-10580339810580343700protein-coding 1655 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_029074.3		1..1642
99.4%		+
8
XM_006515596.3		1617..1654
96.6%		-
12		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CF584983 FASTA
Head Gene (1) Alignment: Bace2 Tail Gene (2) Alignment: Papola Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
5617516-974356029743562100protein-coding1878912-10582828010583693151protein-coding 904 mm10
Updated: 2019-06-12
Owner: ChiTaRS
NM_019517.4		2..21
100.0%		-
16
XM_006515596.3		14..641
99.6%		-
12		1
0
0		intron-exon
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV070116 FASTA
Head Gene (1) Alignment: Papola Tail Gene (2) Alignment: Gm33228 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1878912+10583835710583893511protein-coding10263604918-260287952602882700 982 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_006515596.3		21..600
99.4%		+
12		 Gm33228
XR_877243.1		587..619
100.0%		-
18		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC038159 FASTA
Head Gene (1) Alignment: Ptov1 Tail Gene (2) Alignment: Papola Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
841137-448649554486594520protein-coding1878912+10580962210580970511protein-coding 660 mm10
Updated: 2019-05-28
Owner: ChiTaRS
XR_391372.3		1..524
98.1%		-
7
XM_006515596.3		520..603
100.0%		+
12		1
0
0		intron-exon
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI607904 FASTA
Head Gene (1) Alignment: Papola Tail Gene (2) Alignment: Ginm1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1878912+10583464510583467500protein-coding21575110+7767947776827811 349 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_006515596.3		5..35
100.0%		+
12
XM_006512656.3		19..349
100.0%		+
10		1
0
0		intron-exon

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