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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'PTPRF'

Total of fusion sequences: 14 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

XM_011541872.3
47..71
100.0%
+
1

XM_011541872.3
66..308
98.0%
-
1
0
14783
14792
intron-exon
2
Homo Sapiens

XM_006710795.3
28..211
99.5%
+
1

XM_006710795.3
207..444
98.8%
-
1
0
14783
14792
exon-exon
3
Homo Sapiens

NM_001329138.1
13..207
99.2%
-
1

NM_001329138.1
111..799
98.4%
+
1
2
164
770
exon-exon
4
Homo Sapiens

NM_001329138.1
1..297
99.4%
+
1

NM_001329138.1
295..460
98.8%
-
1
2
164
770
exon-exon
5
Homo Sapiens
1..397
97.9%
+
1
377..401
95.7%
+
11
1
0
0
intron-intron
6
Homo Sapiens

NM_206883.2
7..379
99.0%
-
7

NM_001329138.1
374..428
100.0%
+
1
1
0
0
intron-exon
7
Mus musculus

XM_006502864.1
19..441
99.3%
-
4

NM_139154.2
342..496
95.7%
+
17
1
0
0
intron-intron
8
Homo Sapiens

NM_005228.4
1..236
99.6%
-
7

XM_005271079.3
228..327
99.0%
+
1
1
0
0
exon-exon
9
Mus musculus
Zfp984
A2A7A2

NM_001127189.3
1..31
100.0%
-
4

XM_006502864.1
2..563
96.6%
+
4
1
0
0
intron-exon
10
Homo Sapiens

NM_001329138.1
1..777
99.8%
+
1
LOC105369677
XR_931397.2
761..789
96.6%
-
12
1
0
0
exon-intron

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