Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'PTPRE'

Total of fusion sequences: 6 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

NM_005308.2
5..244
99.2%
-
10

XM_024448092.1
236..411
97.2%
+
10
1
0
0
intron-intron
2
Homo Sapiens
2..21
100.0%
-
5
5..89
100.0%
-
10
1
0
0
intron-intron
3
Homo Sapiens
LINC00299
Q6ZSB3

NR_152741.1
1..21
100.0%
-
2

NM_130435.4
3..316
98.1%
+
10
1
0
0
intron-exon
4
Homo Sapiens
10..41
100.0%
+
10
XKR4
Q5GH76
11..52
100.0%
-
8
1
0
0
intron-intron
5
Homo Sapiens

XM_017012968.2
10..380
99.8%
+
8

XM_024448092.1
364..443
100.0%
-
10
1
0
0
intron-intron
6
Homo Sapiens

XR_242098.2
12..358
98.6%
-
7

XM_024448092.1
340..365
96.2%
+
10
1
0
0
exon-intron

T O P