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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'PTPN2'

Total of fusion sequences: 10 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens ChimerDB
XM_005258125.4
1..130
100.0%
-
18

XR_001752036.2
127..454
100.0%
+
16
1
0
0
exon-exon
Homo Sapiens
XM_024451224.1
2..69
98.2%
+
18

XM_005258125.4
70..110
98.2%
+
18
1
0
0
intron-intronBREAKPOINTs
29099951
Homo Sapiens
XM_005258125.4
1..1601
100.0%
-
18
LOC107986154
XR_001741024.1
1600..1619
100.0%
+
3
1
0
0
exon-intron
Homo Sapiens
XM_005258125.4
1..35
97.2%
-
18

XM_017000084.1
24..270
98.4%
+
1
1
0
0
intron-exon
Homo Sapiens
XM_005258125.4
12..78
100.0%
-
18

XM_005268372.4
76..236
96.9%
+
5
1
0
0
intron-exon
Homo Sapiens
XM_005258125.4
1..242
96.3%
+
18

XR_001755406.2
11..675
99.6%
+
22
1
0
0
intron-intron
Homo Sapiens 1..323
99.7%
+
18
AC078880.3 303..324
100.0%
-
12
1
0
0
intron-intron
Homo Sapiens
ENST00000645191
1..81
95.3%
-
18

NM_001271977.1
20..111
99.0%
+
2
1
0
0
intron-exon
Homo Sapiens
XM_006711410.3
1..379
95.8%
+
1

XM_005258125.4
14..467
99.4%
+
18
1
0
0
intron-exon
Homo Sapiens ANP32B
Q92688

NM_006401.2
29..291
100.0%
+
9

XM_011525705.3
267..295
100.0%
-
18
1
0
0
exon-intron

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