Result for the search: Gene Name/NCBI ID(s): 'PRKAB2'

Total of fusion sequences: 4 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	-	16	17
Homo Sapiens	ChimerDB DA824273 ANNOTATION OF CHIMERA FUSION GenBank ID: DA824273 FASTA Head Gene (1) Alignment: PRKAB2 | OMIM: 602741 Tail Gene (2) Alignment: RFWD2 | OMIM: 608067 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5565 1 - 147166845 147172474 9 1 protein-coding 64326 1 - 176149006 176149076 6 1 tumor suppressor 566 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to AMPK1_CBM (PF16561, IPR032640) 85 100 184 7.4e-33 99.000 Glycogen recognition site of AMP-activated protein kinase IncA (PF04156, IPR007285) 190 159 210 0.0032 3.400 IncA protein WD40 (PF00400, IPR001680, SM00320) 38 315 357 0.006 3.900 WD domain, G-beta repeat ANAPC4_WD40 (PF12894, IPR024977) 92 424 474 0.00014 8.500 Anaphase-promoting complex subunit 4 WD40 domain WD40_like (PF17005, IPR031544) 301 464 598 1.9e-07 16.800 WD40-like domain Updated: 2019-02-21 Owner: ChiTaRS	PRKAB2 O43741 X5D2S2 X5D2Z8 X5D9J1 XR_001737291.2	1..488 99.8%	- 1	RFWD2 Q05CT6 Q8NHY2 X5D2S9 X5D7N8 X5D7W8 X5D9B8 X5DNY7 X5DR91 X5DRD4 XM_011509881.2	486..556 100.0%	- 1	1 0 0	exon-exon
Homo Sapiens	ChimerDB DA947002 ANNOTATION OF CHIMERA FUSION GenBank ID: DA947002 FASTA Head Gene (1) Alignment: RAB5A | OMIM: 179512 Tail Gene (2) Alignment: PRKAB2 | OMIM: 602741 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5868 3 + 19947097 19947281 1 1 oncogene, protein-coding 5565 1 - 147156786 147156890 9 1 protein-coding 291 hg38 Updated: 2019-02-21 Owner: ChiTaRS	RAB5A A0A024R2K1 C9J3X8 F8WCY6 F8WD79 P20339 NM_004162.4	1..186 97.9%	+ 3	PRKAB2 O43741 X5D2S2 X5D2Z8 X5D9J1 XR_001737291.2	187..291 99.1%	- 1	1 0 0	exon-exon
Homo Sapiens	AA836812 ANNOTATION OF CHIMERA FUSION GenBank ID: AA836812 FASTA Head Gene (1) Alignment: LOC105369743 Tail Gene (2) Alignment: PRKAB2 | OMIM: 602741 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105369743 12 - 45431966 45432346 2 0 ncRNA 5565 1 + 147155133 147155194 9 1 protein-coding 443 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Anoct_dimer (PF16178, IPR032394) 227 128 351 2.5e-77 245.700 Dimerisation domain of Ca+-activated chloride-channel, anoctamin Anoctamin (PF04547, IPR007632) 435 354 937 1.7e-159 517.200 Calcium-activated chloride channel Updated: 2019-02-20 Owner: ChiTaRS	LOC105369743 XR_944886.2	1..381 100.0%	- 12	PRKAB2 O43741 X5D2S2 X5D2Z8 X5D9J1 XR_001737291.2	382..443 100.0%	+ 1	1 0 0	intron-exon
Homo Sapiens	BX482434 ANNOTATION OF CHIMERA FUSION GenBank ID: BX482434 FASTA Head Gene (1) Alignment: PRKAB2 | OMIM: 602741 Tail Gene (2) Alignment: ERG | OMIM: 165080 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5565 1 - 147165319 147165378 4 0 protein-coding 2078 21 - 38396831 38397352 8 0 oncogene 584 hg38 Updated: 2019-02-21 Owner: ChiTaRS	PRKAB2 O43741 X5D2S2 X5D2Z8 X5D9J1 XR_001737291.2	9..68 100.0%	- 1	ERG A0A088AWP2 A0A0C4DG41 A8MX39 A8MZ24 B2Y833 B5MDW0 P11308 Q16031 Q7LDT7 NM_001243428.1	63..584 99.9%	- 21	1 0 0	intron-intron

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