Result for the search of Gene Name/NCBI ID(s): 'PPHLN1'

Total of fusion sequences: 11 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs DA251271 ANNOTATION OF CHIMERA FUSION GenBank ID: DA251271 FASTA Head Gene (1) Alignment: PPHLN1 | OMIM: 608150 Tail Gene (2) Alignment: NMI | OMIM: 603525 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51535 12 + 42424830 42425130 10 0 protein-coding 9111 2 - 151273307 151273594 6 0 protein-coding 584 hg38 Updated: 2019-02-21 Owner: ChiTaRS	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XM_011538459.2	1..301 99.4%	+ 12	NMI C9JW17 Q13287 XM_005246941.2	297..584 99.7%	- 2	1 0 0	intron-intron
2 Homo Sapiens	CA418369 ANNOTATION OF CHIMERA FUSION GenBank ID: CA418369 FASTA Head Gene (1) Alignment: PPHLN1 | OMIM: 608150 Tail Gene (2) Alignment: PPHLN1 | OMIM: 608150 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51535 12 - 42441313 42441541 11 1 protein-coding 51535 12 + 42387467 42398958 7 1 protein-coding 523 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Lge1 (PF11488) 72 261 341 5.4e-18 51.700 Transcriptional regulatory protein LGE1 Updated: 2019-02-21 Owner: ChiTaRS	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 NM_201515.1	4..232 100.0%	- 12	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XM_011538459.2	230..523 99.7%	+ 12	0 23976 42430	exon-exon
3 Homo Sapiens	BE841207 ANNOTATION OF CHIMERA FUSION GenBank ID: BE841207 FASTA Head Gene (1) Alignment: PPHLN1 | OMIM: 608150 Tail Gene (2) Alignment: PPHLN1 | OMIM: 608150 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51535 12 - 42374861 42374982 6 1 protein-coding 51535 12 - 42398883 42398995 5 1 protein-coding 464 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Lge1 (PF11488) 72 205 292 4.3e-19 55.200 Transcriptional regulatory protein LGE1 HERV-K_REC (PF15695) 87 337 403 2.4e-08 20.300 Rec (regulator of expression encoded by corf) of HERV-K-113 Updated: 2019-02-20 Owner: ChiTaRS	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XM_011538459.2	13..129 98.3%	- 12	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XM_011538459.2	127..238 100.0%	- 12	0 23976 42430	exon-exon
4 Homo Sapiens	EI792185 ANNOTATION OF CHIMERA FUSION GenBank ID: EI792185 FASTA Head Gene (1) Alignment: LOC107985072 Tail Gene (2) Alignment: PPHLN1 | OMIM: 608150 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 107985072 17 - 40974496 40974836 0 0 ncRNA 51535 12 + 41801215 42299267 1 0 protein-coding 270 hg38 Updated: 2019-03-27 Owner: ChiTaRS	LOC107985072 XR_001752886.1	1..126 95.4%	- 17	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 ENST00000549190	46..267 95.1%	+ 12	1 0 0	intron-intron
5 Homo Sapiens	FN086316 ANNOTATION OF CHIMERA FUSION GenBank ID: FN086316 FASTA Head Gene (1) Alignment: PPHLN1 | OMIM: 608150 Tail Gene (2) Alignment: ADAMTSL1 | OMIM: 609198 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51535 12 + 42405453 42405801 2 0 protein-coding 92949 9 - 18863876 18863895 1 0 protein-coding 78 hg38 Updated: 2018-07-19 Owner: ChiTaRS	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8	1..25 100.0%	+ 12	ADAMTSL1 A0A1B0GUM2 A2A343 A6NIB9 F8WEP3 H7BYE3 Q8N6G6	11..30 100.0%	- 9	1 0 0	intron-intron
6 Homo Sapiens	AV682297 ANNOTATION OF CHIMERA FUSION GenBank ID: AV682297 FASTA Head Gene (1) Alignment: COX5B | OMIM: 123866 Tail Gene (2) Alignment: PPHLN1 | OMIM: 608150 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1329 2 + 97647343 97648194 4 1 protein-coding 51535 12 + 42244095 42308952 14 0 protein-coding 683 hg38 Updated: 2019-02-07 Owner: ChiTaRS	COX5B P10606 Q6FHJ9 Q6FHM4 NM_001862.2	5..304 99.7%	+ 2	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 ENST00000610488	300..371 97.2%	+ 12	1 0 0	exon-intron
7 Homo Sapiens	BF340826 ANNOTATION OF CHIMERA FUSION GenBank ID: BF340826 FASTA Head Gene (1) Alignment: LOC105376861 Tail Gene (2) Alignment: PPHLN1 | OMIM: 608150 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105376861 1 - 23827083 23827122 2 0 ncRNA 51535 12 + 42366666 42367424 9 0 protein-coding 809 hg38 Updated: 2019-01-02 Owner: ChiTaRS	LOC105376861 XR_947068.2	1..39 97.5%	- 1	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XM_011538459.2	34..786 99.1%	+ 12	1 0 0	intron-intron
8 Homo Sapiens	AW580246 ANNOTATION OF CHIMERA FUSION GenBank ID: AW580246 FASTA Head Gene (1) Alignment: PPHLN1 | OMIM: 608150 Tail Gene (2) Alignment: ESYT2 | OMIM: 616691 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51535 12 + 42366458 42366512 0 0 protein-coding 57488 7 + 158731556 158731962 1 1 protein-coding 461 hg38 Updated: 2019-11-28 Owner: ChiTaRS	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XR_001748750.1	45..93 95.2%	+ 12	ESYT2 A0A087WXU3 A0A499FIX8 A0FGR8 H7BXI1 XM_024446847.1	60..461 96.0%	+ 7	1 0 0	intron-exon
9 Homo Sapiens	AW366752 ANNOTATION OF CHIMERA FUSION GenBank ID: AW366752 FASTA Head Gene (1) Alignment: PPHLN1 | OMIM: 608150 Tail Gene (2) Alignment: LOC100132215 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51535 12 - 42447627 42447684 14 1 protein-coding 100132215 2 - 63045410 63045631 4 1 ncRNA 296 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Gag_p10 (PF02337, IPR003322) 84 60 142 2.2e-24 71.500 Retroviral GAG p10 protein RVT_1 (PF00078, IPR000477) 222 377 524 8.3e-20 57.300 Reverse transcriptase (RNA-dependent DNA polymerase) RVT_thumb (PF06817, IPR010661) 66 520 585 3.9e-24 70.500 Reverse transcriptase thumb domain RNase_H (PF00075, IPR002156) 143 731 816 2e-12 33.700 RNase H Integrase_Zn (PF02022, IPR003308) 38 866 903 9e-07 15.100 Integrase Zinc binding domain rve (PF00665, IPR001584) 119 918 982 5.7e-11 28.900 Integrase core domain Updated: 2019-02-20 Owner: ChiTaRS	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XM_011538459.2	22..79 96.6%	- 12	LOC100132215 NR_027069.1	75..296 100.0%	- 2	1 0 0	exon-exon
10 Homo Sapiens	BM014897 ANNOTATION OF CHIMERA FUSION GenBank ID: BM014897 FASTA Head Gene (1) Alignment: TXNRD1 | OMIM: 601112 Tail Gene (2) Alignment: PPHLN1 | OMIM: 608150 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 7296 12 + 104265377 104265912 0 0 protein-coding 51535 12 - 42417925 42418238 0 0 protein-coding 865 hg38 Updated: 2019-06-06 Owner: ChiTaRS	TXNRD1 A0A024RBK9 A0A087WSW9 A0A087WSY9 A0A0B4J225 A0A182DWI3 E2QRB9 E9PIR7 E9PIZ5 E9PJU2 E9PKD3 E9PKI4 E9PLT3 E9PQI3 E9PRI8 F8W809 Q16881 NM_001093771.2	44..577 99.7%	+ 12	PPHLN1 B7Z8L1 F8VP48 F8VPY7 F8VRK2 F8VWU8 F8VXV7 F8W0Q9 F8W6A0 F8WF16 Q8NEY8 XR_001748750.1	558..611 100.0%	- 12	1 0 0	intron-intron

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